Hi Frank,
Below is the CCopasiMessage.getAllMessageText()
All this error shows up when I modify an initial concentration value and re-export the SBML file. The next time I import it, I receive the error .
error: SBML (40): LIBSBML ERROR 10215 at line 2862 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Km2ATP' in the math element of the <kineticLaw> uses 'Km2ATP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2862 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Km2Glc' in the math element of the <kineticLaw> uses 'Km2Glc' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2862 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Ks2Glc' in the math element of the <kineticLaw> uses 'Ks2Glc' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2862 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Vm2' in the math element of the <kineticLaw> uses 'Vm2' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2926 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K3Gly' in the math element of the <kineticLaw> uses 'K3Gly' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2926 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Km30' in the math element of the <kineticLaw> uses 'Km30' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2926 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Km3G6P' in the math element of the <kineticLaw> uses 'Km3G6P' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2926 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Vm3' in the math element of the <kineticLaw> uses 'Vm3' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2926 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'n3' in the math element of the <kineticLaw> uses 'n3' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K4AMP' in the math element of the <kineticLaw> uses 'K4AMP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K4ATP' in the math element of the <kineticLaw> uses 'K4ATP' that is not the id of a species/compartment/parameter/reaction.
.
SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K4F6P' in the math element of the <kineticLaw> uses 'K4F6P' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'L40' in the math element of the <kineticLaw> uses 'L40' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Vm4' in the math element of the <kineticLaw> uses 'Vm4' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c4AMP' in the math element of the <kineticLaw> uses 'c4AMP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c4ATP' in the math element of the <kineticLaw> uses 'c4ATP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c4F6P' in the math element of the <kineticLaw> uses 'c4F6P' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'g4R' in the math element of the <kineticLaw> uses 'g4R' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 2996 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'gT' in the math element of the <kineticLaw> uses 'gT' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K5ADP' in the math element of the <kineticLaw> uses 'K5ADP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K5AMP' in the math element of the <kineticLaw> uses 'K5AMP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K5ATP' in the math element of the <kineticLaw> uses 'K5ATP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K5G3P' in the math element of the <kineticLaw> uses 'K5G3P' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K5NAD' in the math element of the <kineticLaw> uses 'K5NAD' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K5NADH' in the math element of the <kineticLaw> uses 'K5NADH' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'NAD' in the math element of the <kineticLaw> uses 'NAD' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'NADH' in the math element of the <kineticLaw> uses 'NADH' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3120 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Vm5' in the math element of the <kineticLaw> uses 'Vm5' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K6ADP' in the math element of the <kineticLaw> uses 'K6ADP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K6FDP' in the math element of the <kineticLaw> uses 'K6FDP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K6PEP' in the math element of the <kineticLaw> uses 'K6PEP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'L60' in the math element of the <kineticLaw> uses 'L60' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Vm6' in the math element of the <kineticLaw> uses 'Vm6' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c6ADP' in the math element of the <kineticLaw> uses 'c6ADP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c6FDP' in the math element of the <kineticLaw> uses 'c6FDP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c6PEP' in the math element of the <kineticLaw> uses 'c6PEP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'g6R' in the math element of the <kineticLaw> uses 'g6R' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'g6T' in the math element of the <kineticLaw> uses 'g6T' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'h6' in the math element of the <kineticLaw> uses 'h6' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3186 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'q6' in the math element of the <kineticLaw> uses 'q6' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K6ADP' in the math element of the <kineticLaw> uses 'K6ADP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K6FDP' in the math element of the <kineticLaw> uses 'K6FDP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'K6PEP' in the math element of the <kineticLaw> uses 'K6PEP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'L60' in the math element of the <kineticLaw> uses 'L60' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Vm7' in the math element of the <kineticLaw> uses 'Vm7' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c6ADP' in the math element of the <kineticLaw> uses 'c6ADP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c6FDP' in the math element of the <kineticLaw> uses 'c6FDP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'c6PEP' in the math element of the <kineticLaw> uses 'c6PEP' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'g6R' in the math element of the <kineticLaw> uses 'g6R' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'g6T' in the math element of the <kineticLaw> uses 'g6T' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'h6' in the math element of the <kineticLaw> uses 'h6' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3246 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'q6' in the math element of the <kineticLaw> uses 'q6' that is not the id of a species/compartment/parameter/reaction.
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SBML (40): LIBSBML ERROR 10215 at line 3305 column 8: Outside of a <functionDefinition>, if a <ci> element is not the first element within a MathML <apply>, then the <ci>'s value can only be chosen from the set of identifiers of (in L2V1) <species>, <compartment>, or <parameter> objects; (in L2V2-L2V5), <species>, <compartment>, <parameter> or <reaction> objects; (in L3V1) <species>, <compartment>, <parameter>, <reaction> or <speciesReference> objects and (in L3V2) <species>, <compartment>, <parameter>, <reaction>, <speciesReference> objects or L3 package objects with defined mathematical meaning.
Reference: L2V4 Section 3.4.3
The formula 'Vm8' in the math element of the <kineticLaw> uses 'Vm8' that is not the id of a species/compartment/parameter/reaction.
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>EXCEPTION 2022-02-14T15:24:06<
SBML (27): Error in kinetic law for reaction 'Hexokinase'.
>EXCEPTION 2022-02-14T15:24:06<
Error while importing reaction "Vhk".
SBML (27): Error in kinetic law for reaction 'Hexokinase'.