wikipathways-discuss

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Check out our new community forum and check out the new FAQ. The GitHub forum will replace this Google Group forum. GitHub accounts are free if you don't have one already and will be the only account you'll need to contribute to WikiPathways pending the migration.

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Delia Moreno, … Egon Willighagen11

Mar 13

Extraer la información de los pathways con su respectivas interacciones usando SPARQL

On Mon, 11 Mar 2024 at 17:06, Delia Moreno <deliamo...@gmail.com> wrote: I don't know

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Extraer la información de los pathways con su respectivas interacciones usando SPARQL

On Mon, 11 Mar 2024 at 17:06, Delia Moreno <deliamo...@gmail.com> wrote: I don't know

Mar 13

heydar ghiasi, Delia Moreno2

Mar 1

How to find all pathways in specific tissue

Hello, I honestly don't know if it can be extracted from an organ, what I did was put it so that

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How to find all pathways in specific tissue

Hello, I honestly don't know if it can be extracted from an organ, what I did was put it so that

Mar 1

Marek OSTASZEWSKI

Feb 22

Disease Maps Community Meeting 2024: Registration deadline extended

[Apologies for multiple postings] Registration for the 8 th Disease Maps Community Meeting extended!

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Disease Maps Community Meeting 2024: Registration deadline extended

[Apologies for multiple postings] Registration for the 8 th Disease Maps Community Meeting extended!

Feb 22

Marek OSTASZEWSKI

Jan 22

Disease Maps Community Meeting 2024: Abstract submission deadline extended

[Apologies for multiple postings] Call for abstracts for the 8 th Disease Maps Community Meeting

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Disease Maps Community Meeting 2024: Abstract submission deadline extended

[Apologies for multiple postings] Call for abstracts for the 8 th Disease Maps Community Meeting

Jan 22

Marek OSTASZEWSKI

Jan 9

Call for submissions: Disease Maps Community Meeting, 25th-27th of March 2024, Luxembourg

Call for submissions for the 8 th Disease Maps Community Meeting 2024 on 25th-27th of March 2024 in

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Call for submissions: Disease Maps Community Meeting, 25th-27th of March 2024, Luxembourg

Call for submissions for the 8 th Disease Maps Community Meeting 2024 on 25th-27th of March 2024 in

Jan 9

Arturo Manzo Fontes, … Vijay Kumar Ulaganathan6

11/30/23

Trying to delete a Pathway

Hi Kristina, Many thanks for this helpful information. kind regards Vijay On Wednesday, November 29,

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Trying to delete a Pathway

Hi Kristina, Many thanks for this helpful information. kind regards Vijay On Wednesday, November 29,

11/30/23

Vijay Kumar Ulaganathan, Kristina Hanspers5

11/28/23

requesting write acces

Thanks Kristina, I will try it out and let you know if I face any issue. Kind regards Vijay On

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requesting write acces

Thanks Kristina, I will try it out and let you know if I face any issue. Kind regards Vijay On

11/28/23

Qing Zhao, Kristina Hanspers2

11/15/23

wikipathways-discuss@googlegroups.com

Hi Lexie, You can try using web services instead of the bridgedb database. In PathVisio, go to "

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wikipathways-discuss@googlegroups.com

Hi Lexie, You can try using web services instead of the bridgedb database. In PathVisio, go to "

11/15/23

11/14/23

Save the date: Disease Maps Community Meeting, 25-27th of March 2024, Luxembourg

Dear all, We would like to announce the upcoming Disease Maps Community Meeting, a joint event of the

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Save the date: Disease Maps Community Meeting, 25-27th of March 2024, Luxembourg

Dear all, We would like to announce the upcoming Disease Maps Community Meeting, a joint event of the

11/14/23

daniela sanchez gomez, Kristina Hanspers2

10/2/23

Get information about symbols in Pathvisio

Hi Daniela, Our main training resource for new pathway authors is the WikiPathways Academy: https://

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Get information about symbols in Pathvisio

Hi Daniela, Our main training resource for new pathway authors is the WikiPathways Academy: https://

10/2/23

Eric Weitz, … De Sl7

3/23/23

Support for HTTPS in SPARQL endpoint

Hi Eric, Yes, the https change should now be part of every release; if you don't see it directly

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Support for HTTPS in SPARQL endpoint

Hi Eric, Yes, the https change should now be part of every release; if you don't see it directly

3/23/23

2/10/23

Upcoming Changes at WikiPathways

We are excited to roll out a series of major enhancements to WikiPathways in the coming months. These

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Upcoming Changes at WikiPathways

We are excited to roll out a series of major enhancements to WikiPathways in the coming months. These

2/10/23

Morgane TEREZOL

1/30/23

Rare disease pathways sparql request issue

Hello, I would like to extract le list of pathways that are labelled as "RareDiseases". To

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Rare disease pathways sparql request issue

Hello, I would like to extract le list of pathways that are labelled as "RareDiseases". To

1/30/23

Yann Aubert, … alex.pico4

1/17/23

gseWP() enrichWP() R functions error - GMT files absent from WP data downloads current directory

The GMT data are now live and everything should be working as normal. Sorry for the inconvenience!

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gseWP() enrichWP() R functions error - GMT files absent from WP data downloads current directory

The GMT data are now live and everything should be working as normal. Sorry for the inconvenience!

1/17/23

Beat Wolf, … Marvin Martens5

1/7/23

URI encoded query no longer works in sparql

Thank you very much! You just help me avoid many hours of work :) Keep up the great work! Kind

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URI encoded query no longer works in sparql

Thank you very much! You just help me avoid many hours of work :) Keep up the great work! Kind

1/7/23

Tin Yau Pang, Kristina Hanspers4

12/21/22

missing annotations in gpml files

Hi Tin, That makes sense, if you look at the pathway history, it looks like LIPID MAPS identifiers

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missing annotations in gpml files

Hi Tin, That makes sense, if you look at the pathway history, it looks like LIPID MAPS identifiers

12/21/22

Kristina Hanspers

12/20/22

NRNB welcomes mentors and projects for GSoC 2023

The National Resource for Network Biology (NRNB) will be applying as a mentoring organization for

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NRNB welcomes mentors and projects for GSoC 2023

The National Resource for Network Biology (NRNB) will be applying as a mentoring organization for

12/20/22

Eithar Mohamed, Alex Pico2

9/15/22

Request for demo

Hi E, We are primarily a pathway database. The pathways curated at WikiPathways database are then

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Request for demo

Hi E, We are primarily a pathway database. The pathways curated at WikiPathways database are then

9/15/22

Tamar Lahav, De Sl2

9/14/22

failed to Select Gene Mapping Database

Hi Tamar, This might be caused by the name of your file; if you download a file with the same name

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failed to Select Gene Mapping Database

Hi Tamar, This might be caused by the name of your file; if you download a file with the same name

9/14/22

Uku Raudvere, … Alexander Pico3

9/13/22

GMT downloads unavailable

The September 10th release had a hiccup. We're on it. Should be up before the end of the week.

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GMT downloads unavailable

The September 10th release had a hiccup. We're on it. Should be up before the end of the week.

9/13/22

Pierre Klemmer, Martina Kutmon2

5/18/22

Allocate more resources to PathVisio - Importing expression data is very slow

Dear Pierre, Which plugins do you have installed? Can you try to uninstall all plugins before you

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Allocate more resources to PathVisio - Importing expression data is very slow

Dear Pierre, Which plugins do you have installed? Can you try to uninstall all plugins before you

5/18/22

Johannes W. Dietrich, Kristina Hanspers2

5/18/22

Access via PathVisio requested

Hi Johannes, Thank you for your interest in WikiPathways. I have updated the permissions on your

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Access via PathVisio requested

Hi Johannes, Thank you for your interest in WikiPathways. I have updated the permissions on your

5/18/22

Brad Sherman, alex.pico4

5/5/22

Bos taurus pathways no longer in GMT

Note that there are cases where a pathway was converted from human (say, back in 2015) and then was

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Bos taurus pathways no longer in GMT

Note that there are cases where a pathway was converted from human (say, back in 2015) and then was

5/5/22

Luiz Carlos Maia Ladeira, Kristina Hanspers2

5/5/22

Request to use the WP PathVisio plugin

Just for completeness for the mailing list, this inquiry was solved in a separate thread. Kristina On

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Request to use the WP PathVisio plugin

Just for completeness for the mailing list, this inquiry was solved in a separate thread. Kristina On

5/5/22

Aparna Chaturvedi, … alex.pico7

4/2/22

Error uploading xml file in PathVisio tool

Thank you so much for your response Alex and Kristina, I'm considering using NDEx now as well as

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Error uploading xml file in PathVisio tool

Thank you so much for your response Alex and Kristina, I'm considering using NDEx now as well as

4/2/22

Kristina Hanspers

3/23/22

Join NRNB for Google Summer of Code 2022 - open to all newcomers of open source!

WikiPathways is participating in Google Summer of Code 2022 as part of the National Resource for

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Join NRNB for Google Summer of Code 2022 - open to all newcomers of open source!

WikiPathways is participating in Google Summer of Code 2022 as part of the National Resource for

3/23/22

Eric Weitz, Kristina Hanspers3

3/1/22

Proposal: Model "activation" as MIM stimulation

Hi Kristina, Thanks for linking me to those MIM example maps. > Do you have examples of specific

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Proposal: Model "activation" as MIM stimulation

Hi Kristina, Thanks for linking me to those MIM example maps. > Do you have examples of specific

3/1/22

Marvin Martens, Kristina Hanspers2

2/25/22

WikiPathways tutorial findability on Google

Hi Marvin, Thanks for bringing this up, it's an important point. The Help:Contents page and all

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WikiPathways tutorial findability on Google

Hi Marvin, Thanks for bringing this up, it's an important point. The Help:Contents page and all

2/25/22

MAY-WILSON Seb, … Sebastian may-wilson7

1/20/22

Converting GPMLs to data frames

Hi Marek/Denise, Thank you very much for your respective inputs! So, I actually believe Marek you

unread,

Converting GPMLs to data frames

Hi Marek/Denise, Thank you very much for your respective inputs! So, I actually believe Marek you

1/20/22

C. Anthony Lewis, Kristina Hanspers3

1/12/22

Cannot publish WP test pathway

Hi Kristina, Many thanks for the advice - I'll investigate the PathVisio route. My initial query

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Cannot publish WP test pathway

Hi Kristina, Many thanks for the advice - I'll investigate the PathVisio route. My initial query

1/12/22

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