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Check out our new community forum and check out the new FAQ. The GitHub forum will replace this Google Group forum. GitHub accounts are free if you don't have one already and will be the only account you'll need to contribute to WikiPathways pending the migration.

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Luiz Carlos Maia Ladeira

Feb 26

HARMONY 2025 - Only 3 days left for submissions!

Dear colleagues, This is a friendly reminder that we have only 3 days left to submit your breakout

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HARMONY 2025 - Only 3 days left for submissions!

Dear colleagues, This is a friendly reminder that we have only 3 days left to submit your breakout

Feb 26

Luiz Carlos Maia Ladeira

Feb 15

HARMONY 2025 - Deadlines extended

Dear colleagues, HARMONY 2025 breakouts and tutorials submission deadline and lightning talk &

unread,

HARMONY 2025 - Deadlines extended

Dear colleagues, HARMONY 2025 breakouts and tutorials submission deadline and lightning talk &

Feb 15

Luiz Carlos Maia Ladeira

Feb 14

Last day to submit your abstract - Disease Maps Community Meeting 2025 in Leuven, Belgium

Dear all, I hope this email finds you well! This is a friendly reminder about the upcoming Disease

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Last day to submit your abstract - Disease Maps Community Meeting 2025 in Leuven, Belgium

Dear all, I hope this email finds you well! This is a friendly reminder about the upcoming Disease

Feb 14

Luiz Carlos Maia Ladeira

Jan 31

HARMONY 2025: Key Dates Reminder

Dear colleagues, With HARMONY 2025 fast approaching, we're writing to remind you of key deadlines

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HARMONY 2025: Key Dates Reminder

Dear colleagues, With HARMONY 2025 fast approaching, we're writing to remind you of key deadlines

Jan 31

Luiz Carlos Maia Ladeira

Jan 31

DMCM2025 Abstract Submission Deadline Extended to February 14, 2025

Dear all, Following requests from the community, we are happy to announce that the abstract

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DMCM2025 Abstract Submission Deadline Extended to February 14, 2025

Dear all, Following requests from the community, we are happy to announce that the abstract

Jan 31

Maia Ladeira Luiz Carlos

Jan 26

Submit Your Abstracts for DMCM2025 – Deadline Approaching Next Friday - January 31, 2025

Dear all, This is a friendly reminder that the abstract submission deadline for the 9th Disease Maps

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Submit Your Abstracts for DMCM2025 – Deadline Approaching Next Friday - January 31, 2025

Dear all, This is a friendly reminder that the abstract submission deadline for the 9th Disease Maps

Jan 26

Luiz Carlos Maia Ladeira

Jan 10

Disease Maps Community Meeting 2025 in Leuven, Belgium

Dear all, I hope this email finds you well and wish you all a successful New Year! This is a friendly

unread,

Disease Maps Community Meeting 2025 in Leuven, Belgium

Dear all, I hope this email finds you well and wish you all a successful New Year! This is a friendly

Jan 10

Luiz Carlos Maia Ladeira, Maia Ladeira Luiz Carlos2

12/19/24

Fwd: Join us at HARMONY 2025: Advancing Computational Biology Standards | April 15-18, KU Leuven

Dear colleagues, We are pleased to invite you to HARMONY 2025 a codefest-type meeting with a focus on

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Fwd: Join us at HARMONY 2025: Advancing Computational Biology Standards | April 15-18, KU Leuven

Dear colleagues, We are pleased to invite you to HARMONY 2025 a codefest-type meeting with a focus on

12/19/24

Maia Ladeira Luiz Carlos

11/3/24

[Save the date] - Disease Maps Community Meeting 2025 in Leuven, Belgium

Dear all, We are happy to announce the upcoming Disease Maps Community Meeting (DMCM2025), which will

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[Save the date] - Disease Maps Community Meeting 2025 in Leuven, Belgium

Dear all, We are happy to announce the upcoming Disease Maps Community Meeting (DMCM2025), which will

11/3/24

donc...@gmail.com, Kristina Hanspers2

8/9/24

GSEA plug in issues

Hi Petar, I apologize for the late reply. Unfortunately, the developer of the GSEA tool is currently

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GSEA plug in issues

Hi Petar, I apologize for the late reply. Unfortunately, the developer of the GSEA tool is currently

8/9/24

Susmidaseni Balakrishnan, Kristina Hanspers2

7/1/24

Need help in altering the pathway

Hi, PathVisio can't open pathways from KEGG directly, unfortunately. You could see if there's

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Need help in altering the pathway

Hi, PathVisio can't open pathways from KEGG directly, unfortunately. You could see if there's

7/1/24

Marina Costa, … Kristina Hanspers7

6/12/24

KEGG pathway conversion

Hi Marina, I'm not familiar with the MetaboScape software, but I'm assuming you're using

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KEGG pathway conversion

Hi Marina, I'm not familiar with the MetaboScape software, but I'm assuming you're using

6/12/24

donc...@gmail.com, Kristina Hanspers3

6/3/24

dataset import in pathvisio

Thank you Kristina for your swift reply. I`ve misunderstood the second option (System Code) and left

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dataset import in pathvisio

Thank you Kristina for your swift reply. I`ve misunderstood the second option (System Code) and left

6/3/24

Tuan Ngo, Kristina Hanspers2

5/2/24

How to input my metabolomics data

Hi Tuan, You will need the BridgeDb metabolite database available here: https://data.bridgedb.org/

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How to input my metabolomics data

Hi Tuan, You will need the BridgeDb metabolite database available here: https://data.bridgedb.org/

5/2/24

Delia Moreno, … Egon Willighagen11

3/13/24

Extraer la información de los pathways con su respectivas interacciones usando SPARQL

On Mon, 11 Mar 2024 at 17:06, Delia Moreno <deliamo...@gmail.com> wrote: I don't know

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Extraer la información de los pathways con su respectivas interacciones usando SPARQL

On Mon, 11 Mar 2024 at 17:06, Delia Moreno <deliamo...@gmail.com> wrote: I don't know

3/13/24

heydar ghiasi, Delia Moreno2

3/1/24

How to find all pathways in specific tissue

Hello, I honestly don't know if it can be extracted from an organ, what I did was put it so that

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How to find all pathways in specific tissue

Hello, I honestly don't know if it can be extracted from an organ, what I did was put it so that

3/1/24

Marek OSTASZEWSKI

2/22/24

Disease Maps Community Meeting 2024: Registration deadline extended

[Apologies for multiple postings] Registration for the 8 th Disease Maps Community Meeting extended!

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Disease Maps Community Meeting 2024: Registration deadline extended

[Apologies for multiple postings] Registration for the 8 th Disease Maps Community Meeting extended!

2/22/24

Marek OSTASZEWSKI

1/22/24

Disease Maps Community Meeting 2024: Abstract submission deadline extended

[Apologies for multiple postings] Call for abstracts for the 8 th Disease Maps Community Meeting

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Disease Maps Community Meeting 2024: Abstract submission deadline extended

[Apologies for multiple postings] Call for abstracts for the 8 th Disease Maps Community Meeting

1/22/24

Marek OSTASZEWSKI

1/9/24

Call for submissions: Disease Maps Community Meeting, 25th-27th of March 2024, Luxembourg

Call for submissions for the 8 th Disease Maps Community Meeting 2024 on 25th-27th of March 2024 in

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Call for submissions: Disease Maps Community Meeting, 25th-27th of March 2024, Luxembourg

Call for submissions for the 8 th Disease Maps Community Meeting 2024 on 25th-27th of March 2024 in

1/9/24

Arturo Manzo Fontes, … Vijay Kumar Ulaganathan6

11/30/23

Trying to delete a Pathway

Hi Kristina, Many thanks for this helpful information. kind regards Vijay On Wednesday, November 29,

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Trying to delete a Pathway

Hi Kristina, Many thanks for this helpful information. kind regards Vijay On Wednesday, November 29,

11/30/23

Vijay Kumar Ulaganathan, Kristina Hanspers5

11/28/23

requesting write acces

Thanks Kristina, I will try it out and let you know if I face any issue. Kind regards Vijay On

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requesting write acces

Thanks Kristina, I will try it out and let you know if I face any issue. Kind regards Vijay On

11/28/23

Qing Zhao, Kristina Hanspers2

11/15/23

wikipathways-discuss@googlegroups.com

Hi Lexie, You can try using web services instead of the bridgedb database. In PathVisio, go to "

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wikipathways-discuss@googlegroups.com

Hi Lexie, You can try using web services instead of the bridgedb database. In PathVisio, go to "

11/15/23

11/14/23

Save the date: Disease Maps Community Meeting, 25-27th of March 2024, Luxembourg

Dear all, We would like to announce the upcoming Disease Maps Community Meeting, a joint event of the

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Save the date: Disease Maps Community Meeting, 25-27th of March 2024, Luxembourg

Dear all, We would like to announce the upcoming Disease Maps Community Meeting, a joint event of the

11/14/23

daniela sanchez gomez, Kristina Hanspers2

10/2/23

Get information about symbols in Pathvisio

Hi Daniela, Our main training resource for new pathway authors is the WikiPathways Academy: https://

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Get information about symbols in Pathvisio

Hi Daniela, Our main training resource for new pathway authors is the WikiPathways Academy: https://

10/2/23

Eric Weitz, … De Sl7

3/23/23

Support for HTTPS in SPARQL endpoint

Hi Eric, Yes, the https change should now be part of every release; if you don't see it directly

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Support for HTTPS in SPARQL endpoint

Hi Eric, Yes, the https change should now be part of every release; if you don't see it directly

3/23/23

2/10/23

Upcoming Changes at WikiPathways

We are excited to roll out a series of major enhancements to WikiPathways in the coming months. These

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Upcoming Changes at WikiPathways

We are excited to roll out a series of major enhancements to WikiPathways in the coming months. These

2/10/23

Morgane TEREZOL

1/30/23

Rare disease pathways sparql request issue

Hello, I would like to extract le list of pathways that are labelled as "RareDiseases". To

unread,

Rare disease pathways sparql request issue

Hello, I would like to extract le list of pathways that are labelled as "RareDiseases". To

1/30/23

Yann Aubert, … alex.pico4

1/17/23

gseWP() enrichWP() R functions error - GMT files absent from WP data downloads current directory

The GMT data are now live and everything should be working as normal. Sorry for the inconvenience!

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gseWP() enrichWP() R functions error - GMT files absent from WP data downloads current directory

The GMT data are now live and everything should be working as normal. Sorry for the inconvenience!

1/17/23

Beat Wolf, … Marvin Martens5

1/7/23

URI encoded query no longer works in sparql

Thank you very much! You just help me avoid many hours of work :) Keep up the great work! Kind

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URI encoded query no longer works in sparql

Thank you very much! You just help me avoid many hours of work :) Keep up the great work! Kind

1/7/23

Tin Yau Pang, Kristina Hanspers4

12/21/22

missing annotations in gpml files

Hi Tin, That makes sense, if you look at the pathway history, it looks like LIPID MAPS identifiers

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missing annotations in gpml files

Hi Tin, That makes sense, if you look at the pathway history, it looks like LIPID MAPS identifiers

12/21/22

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