Warp 1.1.0 beta

[teg...@gmail.com]

Hey Warp Fam,

It's been a while. 

Here is my first attempt at the long-overdue 1.1.0 beta: https://www.dropbox.com/s/9w59sdwawo32ux2/Warp_110_beta1.zip?dl=0

Most importantly, this version supports the latest Nvidia GPUs because it uses PyTorch for everything ML-related. Unfortunately, this breaks all backward-compatibility with previously trained BoxNet and denoiser models. The latter also includes M species, which you can quickly recreate by reusing the half-maps, mask, and particles from the last iteration of the old species. On the bright side, you can finally use fast GPUs with a lot of memory.

M finally supports Relion 3.1-style STAR files, which should make particle import less annoying. No support for Relion 4.0 – I hope 4.1 finally adopts particle tilt series, which might lead to further format changes soon.

Apart from that, you won't notice many changes. Small tweaks here and there, bug fixes, probably some new bugs.

Still to come in a future beta are command line versions of Warp and M for Linux, and a properly debugged Noise2Tomo, which is an improved take on IsoNet's wonderful idea. I also have yet to write a tutorial for Noise2Tomo, but you might be able to figure it out from the command line options. You need to denoise the tomograms with Noise2Map first, keeping the default folder structure.

I hope to see some of you at the Tomo Congress tomorrow.

Sorry for the delay,

Dimitry

[teg...@gmail.com]

Ah, I forgot what might be the most surprising change: You can decouple the raw data and processing directories now.

[Dennis Michalak]

Hi Dimitry,

Excited for the continued support!

Best,

Dennis

[Hamidreza Rahmani]

Hi Dimitry,

Thank you for your continued support. When I decouple the raw data and processing directories, I noticed that it breaks the IMOD stack generation. I get no movies found for ... or none has been processed in Warp yet. After copying the processing folder into the frames folder (and removing the processing folder in GUI) the problem got resolved.

Best,

Hamid

[Chris van Hoorn]

Hi Dimitry,

I was curious to try noise2tomo in the Warp 1.1.0 beta version. I tried running it once to see the commandline input options and it didn't return any. Instead it gave an error, asking for tilt series input. While trying to run it a second time (with and without input of tomograms or tilt-series), I now consistely get the windows pop-up screen stating: "This app can't run on your PC. To find a version for your PC, check with the software publisher." Noise2map still runs fine.

Do you know how to overcome this so to give it another go?

Best wishes,

Chris

[Florian Fäßler]

Hi everyone,

The Warp 1.1.0 beta installer is no longer available via the Dropbox link originally provided by Dimitry. Could anyone please share the installer?

Thank you very much in advance and best,

Florian

[Nicolas Coudray]

Hi - Did you find a functional link or a place to download that latest version? I've been trying to get it too.

Best,

Nicolas

[B Wimmer]

Hi, 

Here's a re-upload of the Warp beta files I received from somebody on this mailing list last summer - hope it helps.

https://drive.switch.ch/index.php/s/4QhSPoZvwFN7tmd

Best,

Benedikt

[Alister Burt]

Thanks to everyone for coming together here and solving the issue yourselves!

My understanding is that Dimitry currently does not have access to the server where warpem.com is hosted which makes solving issues like this take more effort than they should. 

I'm sorry that this has impacted your ability to install/use the latest version desktop Warp. 

We have things in the pipeline which should make things easier in the future, stay tuned and thank you for your patience :-)

Cheers,

Alister

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[Florian Fäßler]

Thank you, Benedikt!

I re-uploaded the files here, too, in the hopes that it should be maintained for quite some time:

https://seafile.unistra.fr/d/44157c1e129544bb9c43/

Best,

Florian

[Jesse Hansen]

Thanks Flo,

does anyone have the install file for 1.0.9 nightly?   Can't seem to find it on the website.

best,

Jesse