Replying to everybody all at once:
Cogbin issues: Those need to be fixed. It should be more obvious that the keywords are clickable links to get to the right tables. It's not, and that's bad styling, I admit.
Switching to bootstrap, changing the doc themes: Lovely idea. Right now, my goal is to make the site something that's more easily updated, while still being as close as possible to the current design. These things need changing, but I'm not going to tackle them right now.
Youtube videos: I thought I'd made that account able to accept long videos. I'll dig into that and get it fixed.
The content overflow: Can you give me a concrete example of what you mean? Right now, I don't know which page I can look at, or what elements on that page, to see what you're discussing. Without that, I don't know how to try to fix it.
The color changes for the menu items: You're right, and I'll try to fix that. Not sure I will know *how* with Sphinx, but I'll try.