How to input landmark data in TNT

[Tania Chew]

Hello!

I am trying to input landmark information on TNT in order to optimize
and to use them on tree selection, but I have my aligned information
on TPS format, separated by tabs, no by commas. Anybody knows if there
is a way of transform my TPS information automatically to the format
required by TNT?, the most problematic part is the insertion of all
the commas, since I have more than 300 samples!. Or is it possible to
input the TPS format direct to TNT in some way?

--
Has recibido este mensaje porque estás suscrito al grupo "TNT-Tree Analysis using New Technology" de Grupos de Google.
Para publicar una entrada en este grupo, envía un correo electrónico a tnt-tree-analysis-u...@googlegroups.com.
Para anular tu suscripción a este grupo, envía un correo electrónico a tnt-tree-analysis-using-n...@googlegroups.com
Para tener acceso a más opciones, visita el grupo en http://groups.google.com/group/tnt-tree-analysis-using-new-technology?hl=es.

[Santiago Catalano]

Hi Tania!

TNT cannot handle tps format yet, but it is possible that it will be able to do that soon. Meanwhile I have written a C parser to transform tps format into TNT. If you wish I can send it to you.

Best wishes,

Santiago

--
Dr. Santiago A. Catalano
Instituto Miguel Lillo
SM Tucumán - Tucumán
Argentina

[Tania Chew]

Hi Santiago! Thank you for your response, and yes if you could send me the C paser it would be very helpful for me. Thanks again and my best wishes, Tania Chew Biol. Tania Chew Taracena --- El jue, 5/20/10, Santiago Catalano <sacat...@gmail.com> escribió:

[Steven Vidovic]

You can open the TPS file in wordpad, or another plain text reader. Use Ctrl+H to find spaces " " and replace with commas ",". Copy and paste the columns into Excel; copy the column in Excel and transpose paste it into a row; copy the row and paste it under your &[landmark 2d] command in wordpad. Simple!

On Wednesday, 19 May 2010 18:43:46 UTC+1, Tania Chew wrote:

Hello!

I am trying to input landmark information on TNT in order to optimize
and to use them on tree selection, but I have my aligned information
on TPS format, separated by tabs, no by commas. Anybody knows if there
is a way of transform my TPS information automatically to the format
required by TNT?, the most problematic part is the insertion of all
the commas, since I have more than 300 samples!. Or is it possible to
input the TPS format direct to TNT in some way?

--
Has recibido este mensaje porque estás suscrito al grupo "TNT-Tree Analysis using New Technology" de Grupos de Google.

Para publicar una entrada en este grupo, envía un correo electrónico a tnt-tree-analysis-using-new-techn...@googlegroups.com.
Para anular tu suscripción a este grupo, envía un correo electrónico a tnt-tree-analysis-using-new-technology+unsubscribe@googlegroups.com

[Jonathan Liria]

Hi Tania

Please see a short video from my blog with the some instructions for
running landmark data in TNT:

From TPS to TNT...

http://cladisticaybiogeografia.blogspot.com/2011/03/morfometria-y-filogenia.html

Morphometrics and cladistics (video)...

http://cladisticaybiogeografia.blogspot.com/2011/04/morfometria-y-filogenia-2.html

Triangles superposition and phylogeny...

http://cladisticaybiogeografia.blogspot.com/2015/03/morfometria-geometrica-y-filogenia-un.html

Best regards

JL

--
Dr. Jonathan Liria Salazar
Profesor-Investigador (Asociado)
Laboratorio Museo de Zoología
Departamento de Biología, FACYT
Universidad de Carabobo
Email: jli...@uc.edu.ve
Web: http://www.researchgate.net/profile/Jonathan_Liria/
http://www.facyt.uc.edu.ve/biologia/
Blog: http://www.cladisticaybiogeografia.blogspot.com
twitter: @MuseoZoologiaUC