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TNT-Tree Analysis using New Technology
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Victor Conde
20 sept
Inquiry about using TNT on Raspberry Pi (ARM/Linux)
Hi all, I hope this message finds you well. I am interested in using TNT on a Raspberry Pi running
no leída,
Inquiry about using TNT on Raspberry Pi (ARM/Linux)
Hi all, I hope this message finds you well. I am interested in using TNT on a Raspberry Pi running
20 sept
Harriet Nuttall
, …
Martín Morales
6
5 sept
Problems applying hard constraint tree to a fossil maximum likelihood tree
Hi. Apparently you have a problem with the TNT installer. I suggest manual installation. There is a
no leída,
Problems applying hard constraint tree to a fossil maximum likelihood tree
Hi. Apparently you have a problem with the TNT installer. I suggest manual installation. There is a
5 sept
Jacqueline Silviria
11 ago
Errors with EIW assuming xlinks
Out of curiosity, I tried running a default NT search with almost all boxes checked for Puschel et al
no leída,
Errors with EIW assuming xlinks
Out of curiosity, I tried running a default NT search with almost all boxes checked for Puschel et al
11 ago
Dalton Meyer
, …
Apirut Nilpanapan
3
17 jul
TNT 1.6 Maxiumum RAM
Hello Dalton, I used to have this issue (32 Gb of RAM PC). In the TNT 1.6 Windows edition, the “mxram
no leída,
TNT 1.6 Maxiumum RAM
Hello Dalton, I used to have this issue (32 Gb of RAM PC). In the TNT 1.6 Windows edition, the “mxram
17 jul
Daniel Nakamura
,
Edward SIddall
2
15 jun
How to compare trees using Cluster Information Dist
This may be entirely how you saved the trees. On Jun 3, 2025, at 7:45 PM, 'Daniel Nakamura'
no leída,
How to compare trees using Cluster Information Dist
This may be entirely how you saved the trees. On Jun 3, 2025, at 7:45 PM, 'Daniel Nakamura'
15 jun
Guoyi Zhang
, …
Serdar Sönmez
4
29 may
guoyi.run: One-step TNT script for maximum parsimony phylogenetic
Hello Guoyi, Thank you very much for sharing the script and the paper Best Jonathan Liria <
no leída,
guoyi.run: One-step TNT script for maximum parsimony phylogenetic
Hello Guoyi, Thank you very much for sharing the script and the paper Best Jonathan Liria <
29 may
Serdar Sönmez
29 may
Handling Polymorphic States with Asymmetric Stepmatrix in TNT (Windows Interface)
Hello everyone, I am currently facing a challenge in TNT regarding the treatment of polymorphic
no leída,
Handling Polymorphic States with Asymmetric Stepmatrix in TNT (Windows Interface)
Hello everyone, I am currently facing a challenge in TNT regarding the treatment of polymorphic
29 may
Daniel Nakamura
, …
asher...@gmail.com
5
13 abr
Using ttags to save bootstrap and branch lengths in the same newick file
Thanks Martin! It works. FYI others should remember to delete in "phylogram.tree" the first
no leída,
Using ttags to save bootstrap and branch lengths in the same newick file
Thanks Martin! It works. FYI others should remember to delete in "phylogram.tree" the first
13 abr
Adam Cossette
20 mar
Command line newbie
All, I use a windows machine and click my way through commands in TNT. Yesterday after doing that for
no leída,
Command line newbie
All, I use a windows machine and click my way through commands in TNT. Yesterday after doing that for
20 mar
lv xiao
5 mar
Question on negative Bremer support value and synapomorphies
Dear all, I have been learning TNT recently based on a toy dataset of 55 taxa each with 50 continuous
no leída,
Question on negative Bremer support value and synapomorphies
Dear all, I have been learning TNT recently based on a toy dataset of 55 taxa each with 50 continuous
5 mar
ENRIQUE TORRES PARISH
, …
Edward SIddall
6
20 feb
Problems calculating the CI and RI index
You can always do this yourself character by character. Minsteps = number of states. Maxsteps is
no leída,
Problems calculating the CI and RI index
You can always do this yourself character by character. Minsteps = number of states. Maxsteps is
20 feb
Geraldo Alonso Góes Rocha
,
Ambrosio Torres Galvis
3
2 ene
Suggested commands for huge 244 taxa/126 characters matrix
Dear Geraldo, the routine you are using seems unnecessarily heavy. One of the main reasons TNT is
no leída,
Suggested commands for huge 244 taxa/126 characters matrix
Dear Geraldo, the routine you are using seems unnecessarily heavy. One of the main reasons TNT is
2 ene
Muawiz Chaudhary
,
Santiago Catalano
3
20/12/24
Resistant Fit Alignment
Thanks Santiago, this was very helpful and solves my question. I'll update this thread if my
no leída,
Resistant Fit Alignment
Thanks Santiago, this was very helpful and solves my question. I'll update this thread if my
20/12/24
อภิรัตน์ นิลพนาพรรณ
19/11/24
Bremer.run error in TNT v1.6 (Windows11)
Dear erveyine I am using TNT 1.6 on Windows 11, and when I try to use the command 'Bremer'
no leída,
Bremer.run error in TNT v1.6 (Windows11)
Dear erveyine I am using TNT 1.6 on Windows 11, and when I try to use the command 'Bremer'
19/11/24
T. Xu
,
Mark
2
4/11/24
TBR branch-swapping with 1000000 trees found (overflow)
The “hold" you are using inside of xmult is not the same as the global “hold”. So, presumably
no leída,
TBR branch-swapping with 1000000 trees found (overflow)
The “hold" you are using inside of xmult is not the same as the global “hold”. So, presumably
4/11/24
Kajal Chandra
30/9/24
Help to load input files in TNT
Hello, I am for the first time with TNT, I am interested in generating Bremer support and mapping
no leída,
Help to load input files in TNT
Hello, I am for the first time with TNT, I am interested in generating Bremer support and mapping
30/9/24
Buz Wilson
12/8/24
xlinks allowed combinations
Dear TNT folk I have sent this message as a bug report but perhaps someone else out there could
no leída,
xlinks allowed combinations
Dear TNT folk I have sent this message as a bug report but perhaps someone else out there could
12/8/24
Adam Cossette
, …
Mark
4
12/8/24
Issues when searching trees from ram
One of the powers of the new technology search, over the traditional search is that in the
no leída,
Issues when searching trees from ram
One of the powers of the new technology search, over the traditional search is that in the
12/8/24
Adam Cossette
,
Mark
2
9/8/24
Confusion when searching trees from RAM
When some replicates overflowed it generally means that while you may have run 1000 replicates, some
no leída,
Confusion when searching trees from RAM
When some replicates overflowed it generally means that while you may have run 1000 replicates, some
9/8/24
Carolina H-Sepúlveda
23/7/24
Re: Implied weighting on certain species
Hi dear Tao, I hope everything is fine, I'm very grateful to receive your email. Thanks a lot!
no leída,
Re: Implied weighting on certain species
Hi dear Tao, I hope everything is fine, I'm very grateful to receive your email. Thanks a lot!
23/7/24
Shawn DeNarie
, …
Nick Matzke
5
16/7/24
Exporting and Opening Trees with Node Supports and Bremer Supports in Nexus Format
Hi all, It may well depend on your specific method for exporting tags in TNT, but I wrote some
no leída,
Exporting and Opening Trees with Node Supports and Bremer Supports in Nexus Format
Hi all, It may well depend on your specific method for exporting tags in TNT, but I wrote some
16/7/24
ZQ Xu
23/4/24
Doubts about the use of the script wincladtree.run
Hi TNTers. I'm having some problems with the TNT display tree file call wincladtree.run, I can
no leída,
Doubts about the use of the script wincladtree.run
Hi TNTers. I'm having some problems with the TNT display tree file call wincladtree.run, I can
23/4/24
ZQ Xu
23/4/24
Seeking help with analyzing combinations of multiple data types
Hi TNTers. Has anyone combined multiple data (eg coding data, molecular data, geometric morphology
no leída,
Seeking help with analyzing combinations of multiple data types
Hi TNTers. Has anyone combined multiple data (eg coding data, molecular data, geometric morphology
23/4/24
T. Xu
, …
Martín Ramírez
5
22/4/24
weird consensus tree
Hi Tao, It is probably because you have taxa without any data in common, eg, Palaemon_concinnus
no leída,
weird consensus tree
Hi Tao, It is probably because you have taxa without any data in common, eg, Palaemon_concinnus
22/4/24
Jacqueline Silviria
,
Santiago Catalano
3
17/4/24
[TNT] Colleague having problems saving node labels/tree tags to NEXUS format
Hi Jacqueline, have you solved the issue of exporting the tree labeled? bests Santi On Fri, Apr 12,
no leída,
[TNT] Colleague having problems saving node labels/tree tags to NEXUS format
Hi Jacqueline, have you solved the issue of exporting the tree labeled? bests Santi On Fri, Apr 12,
17/4/24
Rob Hun
2
26/3/24
Gaps at the beginning of a nucleotide sequence are treated differently?
This was solved by a very thorough and quick response from Pablo (TNT's bug reporting). In case
no leída,
Gaps at the beginning of a nucleotide sequence are treated differently?
This was solved by a very thorough and quick response from Pablo (TNT's bug reporting). In case
26/3/24
antoine laboury
12/3/24
TNT V1.6 on mac M1 freezes when using Xmult
Dear everyone, I am using TNT command version V1.6 on a mac M1 for a couple of years now. However,
no leída,
TNT V1.6 on mac M1 freezes when using Xmult
Dear everyone, I am using TNT command version V1.6 on a mac M1 for a couple of years now. However,
12/3/24
Alex Maile
,
Martín Morales
3
5/2/24
Error in running GUI
Hello again, Another user reported the same issue and it's not a problem of architecture. As a
no leída,
Error in running GUI
Hello again, Another user reported the same issue and it's not a problem of architecture. As a
5/2/24
Rutger Vos
, …
pierre gousset
6
5/2/24
still confused about constraints
Dear Pablo, Thank you for your answer. In fact, I found the solution to my issues, mainly thanks to a
no leída,
still confused about constraints
Dear Pablo, Thank you for your answer. In fact, I found the solution to my issues, mainly thanks to a
5/2/24
M Lee (Zeke)
4/12/23
How to match morphological results with molecular?
Hello everyone, I'm Zeke. I use TNT version 1.5 for phylogenetic analysis based on morphological
no leída,
How to match morphological results with molecular?
Hello everyone, I'm Zeke. I use TNT version 1.5 for phylogenetic analysis based on morphological
4/12/23