implied weights

[sfde...@yahoo.com]

Hello

Can anyone tell me the steps how to use implied weights when I want to run a tree, I am using a cytb data set for 75 taxa. Its not just clear to me. I can get my fasta data file and run it and get a consecsus tree. Any step by steip advice is appreciated.I am not very much familiar with TNT, very basic experience. Thank you.Shobnom

[Santiago Catalano]

Hi Shobnom, 

This tutorial Might help you.

http://tnt.insectmuseum.org/index.php/I_want_to_make_an_analysis_under_implied_weights

bests,

santiago

On Thu, Jun 13, 2013 at 12:09 AM, <sfde...@yahoo.com> wrote:

Hello

Can anyone tell me the steps how to use implied weights when I want to run a tree, I am using a cytb data set for 75 taxa. Its not just clear to me. I can get my fasta data file and run it and get a consecsus tree. Any step by steip advice is appreciated.I am not very much familiar with TNT, very basic experience. Thank you.Shobnom

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[sfde...@yahoo.com]

Thank you very much. My next question is  K value always 3, or if I can calculate for my data set then how to do that. I have requested the paper associated with this subject,but have not got it yet. Any help is much appreciated. 

[sfde...@yahoo.com]

Hello Everyone

I could run my tree using K=3, my question is I can not see any value or number on the tree, how to interpret the result? I got MP tree using other programs as well. Is there any way I could explain how much implied weight influenced each node or clade or character? Sorry for my questions, I did not get the paper explaining Implied weights and I have so many questions.

Sincerely,

Shobnom

On Wednesday, June 12, 2013 10:09:35 PM UTC-5, sfde...@yahoo.com wrote:

[Jonathan Liria]

Hello Shobnom

In PDF attachment you will find the Goloboff's paper, explaining the
method of Implied weights.

Best regards

JL

--
Dr. Jonathan Liria Salazar
Profesor-Investigador (Asociado)
Departamento de Biología
Facultad de Ciencias y Tecnología
Universidad de Carabobo
Email: jli...@uc.edu.ve
Email2: jonatha...@gmail.com
Web: http://filogenetica-org-directorio.blogspot.com/2011/01/liria.html
http://www.facyt.uc.edu.ve/biologia/
Blog: http://www.cladisticaybiogeografia.blogspot.com
MSN: jli...@hotmail.com