William!,
Drill through the lug, no bigger than you need to clear the wire + a piece of heat-shrink reinforcement, and deburr carefully. It'll be fine, esp. if it is a heavy downtube (like that used on the Atlantis). Alex Singer has done this for over seventy years and it hasn't been an issue. Deburring is not optional here--you don't want a stress-riser due to a rough edge to your drill hole.
If you were dealing with a bike without lugs (welded or fillet brazed), then you would need to silver on/in a reinforcement, as the underside of the downtube at the head tube is pretty highly stressed in regular use.
I will bet a lightly-used Clement cycling cap to a dozen cans of smoked herring that Rivendell isn't interested in telling you it is okay.
Grant is pretty well known for exceptionally conservative (read stiff to dead) frame tube choice, and he justifies building these fantastically-stout frames in part out of fear that he'll see a failure come back. The Atlantis is a very, very stout bike.
Best Regards,
Will
William M. deRosset
Fort Collins, CO