plink2-dev

Ok, it looks like what I was seeing was a failure because I was making an incorrect assumption about

Oh ok, interesting - I would have thought that the .pvar and .pgen would have to be kept in sync for

1. Have you tried "pip install pgenlib" (or "pip3 install pgenlib")? 2. No; from

Ok, thanks for the quick response. So I'll always use plink2::kPglMaxVariantCt as my variant

Thank you for the quick response, I used the git repo and I was able to build the the executable in

Hi, I have a question about calculate polygenic risk score when the association test is 2-df(model

Thank you for the clarification. PLINK 1.9 documentation is indeed clearer in this regard. Thanks,

Perfect, thank you! On Monday, 24 October 2022 at 14:45:35 UTC-4 chrch...@gmail.com wrote: ".fam

Bugfix is posted. On Thursday, March 10, 2022 at 8:01:24 AM UTC-8 choish...@gmail.com wrote: Hi Chris

That's really quick! Thanks so much! On Thursday, 24 February 2022 at 00:56:28 UTC-5 chrch...@

Thank you so much! That should solve all my problem for now Sam On Monday, 21 February 2022 at 13:18:

That's exactly what I needed. Thanks Chris! On Wednesday, 5 January 2022 at 17:57:25 UTC-5 chrch.

Ah okay, that makes more sense. Will try again with these modification. Thank you! On Monday, April

For the record, this was resolved in plink2-users: https://groups.google.com/g/plink2-users/c/

Awesome, thank you. On Monday, January 25, 2021 at 3:08:27 AM UTC+1 chrch...@gmail.com wrote: I'

That's because you created a .bim file lacking most of the alleles. If you start with the .ped

Thanks! That was helpful. On Thursday, October 17, 2019 at 7:23:34 PM UTC-7, Christopher Chang wrote:

This type of question is more appropriate for the plink2-users group. But yes, plink2 shouldn't

Sorry about neglecting this post for so long. While there are no plans to add this to the official

Hi Paolo, The plink2 merger will definitely use more than 1 thread, but it also has to deal with a

Galaxy supports using conda packages for dependencies such as PLINK. I'd highly recommend using

Yes, this analysis looks correct to me; thanks for reporting it! I will post a build with this change

Possibly relevant: http://stackoverflow.com/questions/31038366/atlas-lapack-not-linking-to-blas On

Hi, there is a problem with the alternative frequency filtering approach. The --cnv-freq-exclude-

Hi Chris, Unfortunately those logs got overwritten by re-runs to work around this issue in the past

Hi, I just downloaded the 24th Feb version and it solved the --indep-pairwise error.r But I still

What other programming languages are you familiar with? I ask because, (i) if you have *no* previous

By default, the 5th column in the .bim ("A1") is the minor allele and the 6th column (

Hi, When you cut and paste from excel are there any empty cells, ie do you just select the data to be

Hi, I am trying to debug plink using CLion but I did not find a way to do it. CLion uses its own