obo unit tests

[Nomi Harris]

Preparing to run unit tests for obo...
svn updating OBO...
Rebuilding...
Running 54 or so tests (some may be skipped).

Skipping AAOBOTest

Skipping AbstractAnnotationTest

Skipping AbstractOBOTest

Skipping AbstractReasonerFaceoffTest

Skipping AbstractReasonerTest

ant runatest -Djunit.test.class.name="org.obo.test.AdvancedReasonerTest" >/users/nomi/workspace/OBO/testlogs/AdvancedReasonerTest.out 2>&1
AdvancedReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 6.206 sec

Skipping AllReasonerTests

Skipping AllReasonerTestsWithFCR

Skipping AllReasonerTestsWithLPR

Skipping AllReasonerTestsWithPellet

Skipping AllReasonerTestsWithRBR

Skipping AllTests

ant runatest -Djunit.test.class.name="org.obo.test.AnnotationStanzaFileTest" >/users/nomi/workspace/OBO/testlogs/AnnotationStanzaFileTest.out 2>&1
AnnotationStanzaFileTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.144 sec

ant runatest -Djunit.test.class.name="org.obo.test.CardinalityIntersectionTest" >/users/nomi/workspace/OBO/testlogs/CardinalityIntersectionTest.out 2>&1
CardinalityIntersectionTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.664 sec

ant runatest -Djunit.test.class.name="org.obo.test.CardinalityTest" >/users/nomi/workspace/OBO/testlogs/CardinalityTest.out 2>&1
CardinalityTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.468 sec

ant runatest -Djunit.test.class.name="org.obo.test.DanglingObjectTest" >/users/nomi/workspace/OBO/testlogs/DanglingObjectTest.out 2>&1
DanglingObjectTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.844 sec

ant runatest -Djunit.test.class.name="org.obo.test.DisjointnessTest" >/users/nomi/workspace/OBO/testlogs/DisjointnessTest.out 2>&1
DisjointnessTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.159 sec

ant runatest -Djunit.test.class.name="org.obo.test.DisjointnessTest2" >/users/nomi/workspace/OBO/testlogs/DisjointnessTest2.out 2>&1
DisjointnessTest2: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.798 sec

ant runatest -Djunit.test.class.name="org.obo.test.FilterTest" >/users/nomi/workspace/OBO/testlogs/FilterTest.out 2>&1
FilterTest: Tests run: 7, Failures: 3, Errors: 0, Time elapsed: 1.508 sec

ant runatest -Djunit.test.class.name="org.obo.test.FixedCacheMutableLinkDatabaseTest" >/users/nomi/workspace/OBO/testlogs/FixedCacheMutableLinkDatabaseTest.out 2>&1
FixedCacheMutableLinkDatabaseTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 2.37 sec

ant runatest -Djunit.test.class.name="org.obo.test.GOAnnotationFilePlusOntologyTest" >/users/nomi/workspace/OBO/testlogs/GOAnnotationFilePlusOntologyTest.out 2>&1
GOAnnotationFilePlusOntologyTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 50.007 sec

ant runatest -Djunit.test.class.name="org.obo.test.GOAnnotationFileTest" >/users/nomi/workspace/OBO/testlogs/GOAnnotationFileTest.out 2>&1
GOAnnotationFileTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 4.825 sec

ant runatest -Djunit.test.class.name="org.obo.test.HoldsOverChainReasonerTest" >/users/nomi/workspace/OBO/testlogs/HoldsOverChainReasonerTest.out 2>&1
HoldsOverChainReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.535 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDMapperTest" >/users/nomi/workspace/OBO/testlogs/IDMapperTest.out 2>&1
IDMapperTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 13.3 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDMapperTestWithIDLifecycle" >/users/nomi/workspace/OBO/testlogs/IDMapperTestWithIDLifecycle.out 2>&1
IDMapperTestWithIDLifecycle: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 4.308 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDMapperTestWithReasoner" >/users/nomi/workspace/OBO/testlogs/IDMapperTestWithReasoner.out 2>&1
IDMapperTestWithReasoner: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.384 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDUpdateTest" >/users/nomi/workspace/OBO/testlogs/IDUpdateTest.out 2>&1
IDUpdateTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.975 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionBloodCellExampleTest" >/users/nomi/workspace/OBO/testlogs/IntersectionBloodCellExampleTest.out 2>&1
IntersectionBloodCellExampleTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 52.627 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionBloodCellExampleTestWithPellet" >/users/nomi/workspace/OBO/testlogs/IntersectionBloodCellExampleTestWithPellet.out 2>&1
IntersectionBloodCellExampleTestWithPellet: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.042 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionCamphorCatabolismExampleTest" >/users/nomi/workspace/OBO/testlogs/IntersectionCamphorCatabolismExampleTest.out 2>&1
IntersectionCamphorCatabolismExampleTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.189 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionUsingSubRelationsTest" >/users/nomi/workspace/OBO/testlogs/IntersectionUsingSubRelationsTest.out 2>&1
IntersectionUsingSubRelationsTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.029 sec

ant runatest -Djunit.test.class.name="org.obo.test.InverseAlwaysImpliedTest" >/users/nomi/workspace/OBO/testlogs/InverseAlwaysImpliedTest.out 2>&1
InverseAlwaysImpliedTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.94 sec

ant runatest -Djunit.test.class.name="org.obo.test.LinkPileReasonerTest" >/users/nomi/workspace/OBO/testlogs/LinkPileReasonerTest.out 2>&1
LinkPileReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 16.707 sec

ant runatest -Djunit.test.class.name="org.obo.test.NamespaceTest" >/users/nomi/workspace/OBO/testlogs/NamespaceTest.out 2>&1
NamespaceTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 1.405 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDAnnotationSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDAnnotationSaveTest.out 2>&1
OBDAnnotationSaveTest: Tests run: 3, Failures: 0, Errors: 3, Time elapsed: 3.444 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDPostcompSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDPostcompSaveTest.out 2>&1
OBDPostcompSaveTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 2.494 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDQueryTest" >/users/nomi/workspace/OBO/testlogs/OBDQueryTest.out 2>&1
OBDQueryTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.411 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDSaveTest.out 2>&1
OBDSaveTest: Tests run: 3, Failures: 0, Errors: 3, Time elapsed: 2.581 sec

ant runatest -Djunit.test.class.name="org.obo.test.PostcompSyntaxFileTest" >/users/nomi/workspace/OBO/testlogs/PostcompSyntaxFileTest.out 2>&1
PostcompSyntaxFileTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.534 sec

ant runatest -Djunit.test.class.name="org.obo.test.PropertyIntersectionTest" >/users/nomi/workspace/OBO/testlogs/PropertyIntersectionTest.out 2>&1
PropertyIntersectionTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.857 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerFilterTest" >/users/nomi/workspace/OBO/testlogs/ReasonerFilterTest.out 2>&1
ReasonerFilterTest: Tests run: 7, Failures: 4, Errors: 0, Time elapsed: 2.874 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerRedundancyTest" >/users/nomi/workspace/OBO/testlogs/ReasonerRedundancyTest.out 2>&1
ReasonerRedundancyTest: Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 1.025 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerRedundancyTest2" >/users/nomi/workspace/OBO/testlogs/ReasonerRedundancyTest2.out 2>&1
ReasonerRedundancyTest2: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.829 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerTest" >/users/nomi/workspace/OBO/testlogs/ReasonerTest.out 2>&1
ReasonerTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0 sec
(may have timed out)

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerUndoRedoTest" >/users/nomi/workspace/OBO/testlogs/ReasonerUndoRedoTest.out 2>&1
ReasonerUndoRedoTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0 sec
(may have timed out)

ant runatest -Djunit.test.class.name="org.obo.test.RedundancyTest" >/users/nomi/workspace/OBO/testlogs/RedundancyTest.out 2>&1
RedundancyTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.191 sec

ant runatest -Djunit.test.class.name="org.obo.test.RelationPropertiesReasonerTest" >/users/nomi/workspace/OBO/testlogs/RelationPropertiesReasonerTest.out 2>&1
RelationPropertiesReasonerTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.755 sec

ant runatest -Djunit.test.class.name="org.obo.test.RemoveRedundantLinksTest" >/users/nomi/workspace/OBO/testlogs/RemoveRedundantLinksTest.out 2>&1
RemoveRedundantLinksTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.778 sec

ant runatest -Djunit.test.class.name="org.obo.test.SimpleReasonerTest" >/users/nomi/workspace/OBO/testlogs/SimpleReasonerTest.out 2>&1
SimpleReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.905 sec

ant runatest -Djunit.test.class.name="org.obo.test.SubRelationReasonerTest" >/users/nomi/workspace/OBO/testlogs/SubRelationReasonerTest.out 2>&1
SubRelationReasonerTest: Tests run: 10, Failures: 0, Errors: 1, Time elapsed: 2.155 sec

ant runatest -Djunit.test.class.name="org.obo.test.TransitivityTest" >/users/nomi/workspace/OBO/testlogs/TransitivityTest.out 2>&1
TransitivityTest: Tests run: 2, Failures: 1, Errors: 0, Time elapsed: 1.56 sec

ant runatest -Djunit.test.class.name="org.obo.test.TrimmingLibraryTest" >/users/nomi/workspace/OBO/testlogs/TrimmingLibraryTest.out 2>&1
TrimmingLibraryTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 7.632 sec

ant runatest -Djunit.test.class.name="org.obo.test.TrimmingTest" >/users/nomi/workspace/OBO/testlogs/TrimmingTest.out 2>&1
TrimmingTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 11.956 sec

ant runatest -Djunit.test.class.name="org.obo.test.WebSearchUtilTest" >/users/nomi/workspace/OBO/testlogs/WebSearchUtilTest.out 2>&1
WebSearchUtilTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 3.493 sec

Begin time: Thu Apr 29 01:06:01 PDT 2010. End time: Thu Apr 29 01:39:20 PDT 2010
Output from tests is in /users/nomi/workspace/OBO/testlogs
Ran 43 obo unit tests. 24 passed.

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