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Nomi Harris
,
Thomas Waechter
2
8/19/11
Change in gopubmed-ontology-generation-service-clients-jar-with-dependencies.jar stops obo2obo from printing output
Hallo, the problem with the missing output was, that I changed in my own log4j.properties the log
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Change in gopubmed-ontology-generation-service-clients-jar-with-dependencies.jar stops obo2obo from printing output
Hallo, the problem with the missing output was, that I changed in my own log4j.properties the log
8/19/11
Nomi Harris
, …
Eurie Hong
3
5/31/11
Re: [OBO-Edit Working Group] GO-help email request: configuring JVM for Windows
Sorry, I didn't realize these mailing lists for the OBO-Edit working group existed. Can someone
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Re: [OBO-Edit Working Group] GO-help email request: configuring JVM for Windows
Sorry, I didn't realize these mailing lists for the OBO-Edit working group existed. Can someone
5/31/11
Nomi Harris
, …
David Osumi-Sutherland
5
4/25/11
OBO parser doesn't like something in fly_anatomy_XP.obo
Hi Nomi, Thanks for tracing this and implementing the check. No idea how the error crept in to the
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OBO parser doesn't like something in fly_anatomy_XP.obo
Hi Nomi, Thanks for tracing this and implementing the check. No idea how the error crept in to the
4/25/11
Nomi Harris
1/7/11
Synonym commit problem in OE2.1b7? [was Re: Requested files]
Hi Harold, Thanks for sending goche.obo and your logfile. I am still unable to reproduce the problem;
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Synonym commit problem in OE2.1b7? [was Re: Requested files]
Hi Harold, Thanks for sending goche.obo and your logfile. I am still unable to reproduce the problem;
1/7/11
Nomi Harris
,
Nicole Washington
3
10/18/10
OBO-Edit Graph Viewer and ancestor views
Good news: Amina has fixed this Graph Viewer bug in OBO-Edit, so Phenote will now be able to show
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OBO-Edit Graph Viewer and ancestor views
Good news: Amina has fixed this Graph Viewer bug in OBO-Edit, so Phenote will now be able to show
10/18/10
Chris Mungall
9/28/10
Re: [Gohelp] Fwd: OBO parser
Hi Tim Sorry for the delayed response. Unfortunately, the term "property" is ambiguous
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Re: [Gohelp] Fwd: OBO parser
Hi Tim Sorry for the delayed response. Unfortunately, the term "property" is ambiguous
9/28/10
Nomi Harris
,
Amina Abdulla
3
9/17/10
completes -> getCompletes
OBO-Edit and associated jars should be up-to-date now. Thanks, Amina On 9/17/10 10:33 AM, Nomi Harris
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completes -> getCompletes
OBO-Edit and associated jars should be up-to-date now. Thanks, Amina On 9/17/10 10:33 AM, Nomi Harris
9/17/10
Chris Mungall
8/16/10
OBO syntax and reference java implementation
I have commenced a java implementation of the 1.4 spec[*]. Even though the spec needs work, I find
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OBO syntax and reference java implementation
I have commenced a java implementation of the 1.4 spec[*]. Even though the spec needs work, I find
8/16/10
Nomi Harris
,
Amina Abdulla
4
5/27/10
Latest CHEBI.obo causes problems for Phenote and OBO-Edit
No, I have OBO-Edit using 1600M of memory--that wasn't the problem. The problem turns out to be
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Latest CHEBI.obo causes problems for Phenote and OBO-Edit
No, I have OBO-Edit using 1600M of memory--that wasn't the problem. The problem turns out to be
5/27/10
Nomi Harris
,
Amina Abdulla
6
5/18/10
Exception in org.bbop.util.AbstractTaskDelegate.run
The exception seems to originate with the Graph Viewer. The latest OBO-Edit throws this exception
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Exception in org.bbop.util.AbstractTaskDelegate.run
The exception seems to originate with the Graph Viewer. The latest OBO-Edit throws this exception
5/18/10
Nomi Harris
5/6/10
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
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oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
5/6/10
Nomi Harris
4/29/10
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
unread,
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
4/29/10
Nomi Harris
5/13/10
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
unread,
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
5/13/10
Nomi Harris
5/6/10
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
unread,
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
5/6/10
Nomi Harris
,
Nomi Harris
3
4/29/10
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
unread,
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
4/29/10
Nomi Harris
5/13/10
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
unread,
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
5/13/10
Chris Mungall
,
Amina Abdulla
2
5/10/10
allowdangling option in obo2obo
Thanks for pointing that out Chris. I've removed the discrepancy. allowdangling will be default
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allowdangling option in obo2obo
Thanks for pointing that out Chris. I've removed the discrepancy. allowdangling will be default
5/10/10
Thomas Kappler
,
Chris Mungall
2
4/28/10
Parsing OBO from a String
On Apr 28, 2010, at 2:49 AM, Thomas Kappler wrote: > Hi again, > > I'd like to parse
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Parsing OBO from a String
On Apr 28, 2010, at 2:49 AM, Thomas Kappler wrote: > Hi again, > > I'd like to parse
4/28/10
Thomas Kappler
,
Chris Mungall
2
4/26/10
REST data adapter?
The OBD API provides a bridge to the OE object model and a RESTful interface See http://www.
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REST data adapter?
The OBD API provides a bridge to the OE object model and a RESTful interface See http://www.
4/26/10
Thomas Kappler
,
Chris Mungall
3
4/26/10
Where to put my own DataAdapter
On Apr 23, 1:39 am, Chris Mungall <c...@berkeleybop.org> wrote: > See:http://wiki.
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Where to put my own DataAdapter
On Apr 23, 1:39 am, Chris Mungall <c...@berkeleybop.org> wrote: > See:http://wiki.
4/26/10
Nomi Harris
, …
Ed Lee
5
4/23/10
Java 1.6 displays tables differently (worse)
Hey, thanks so much for fixing it, Jim! Now the tables look nice again. Yesterday I had tried
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Java 1.6 displays tables differently (worse)
Hey, thanks so much for fixing it, Jim! Now the tables look nice again. Yesterday I had tried
4/23/10
Nomi Harris
2
4/15/10
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
unread,
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
4/15/10
Nomi Harris
4/8/10
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
unread,
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
4/8/10
Nomi Harris
2
4/15/10
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
unread,
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
4/15/10
Thomas Wächter
,
Chris Mungall
2
4/6/10
Definitions in OBO format
def. I've fixed the docs, thanks On Apr 6, 2010, at 7:47 AM, Thomas Wächter wrote: > Hello,
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Definitions in OBO format
def. I've fixed the docs, thanks On Apr 6, 2010, at 7:47 AM, Thomas Wächter wrote: > Hello,
4/6/10
Nomi Harris
4/1/10
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
unread,
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
4/1/10
Nomi Harris
4/1/10
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
unread,
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
4/1/10
Nomi Harris
3/18/10
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
unread,
obo unit tests
Preparing to run unit tests for obo... svn updating OBO... Rebuilding... Running 54 or so tests (some
3/18/10
Nomi Harris
3/18/10
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
unread,
oboedit unit tests
Preparing to run unit tests for oboedit... svn updating OBO... svn updating oboedit... Rebuilding...
3/18/10
Nomi Harris
,
Amina Abdulla
2
3/17/10
Something has changed in OBO that breaks Phenote and OBO-Edit
This is definitely a phenote build path issue again. One way to test is to remove the bbop, obo and
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Something has changed in OBO that breaks Phenote and OBO-Edit
This is definitely a phenote build path issue again. One way to test is to remove the bbop, obo and
3/17/10