Preparing to run unit tests for obo...
svn updating OBO...
Rebuilding...
Running 54 or so tests (some may be skipped).
Skipping AAOBOTest
Skipping AbstractAnnotationTest
Skipping AbstractOBOTest
Skipping AbstractReasonerFaceoffTest
Skipping AbstractReasonerTest
ant runatest -
Djunit.test.class.name="org.obo.test.AdvancedReasonerTest" >/users/nomi/workspace/OBO/testlogs/AdvancedReasonerTest.out 2>&1
AdvancedReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 3.619 sec
Skipping AllReasonerTests
Skipping AllReasonerTestsWithFCR
Skipping AllReasonerTestsWithLPR
Skipping AllReasonerTestsWithPellet
Skipping AllReasonerTestsWithRBR
Skipping AllTests
ant runatest -
Djunit.test.class.name="org.obo.test.AnnotationStanzaFileTest" >/users/nomi/workspace/OBO/testlogs/AnnotationStanzaFileTest.out 2>&1
AnnotationStanzaFileTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.862 sec
ant runatest -
Djunit.test.class.name="org.obo.test.CardinalityIntersectionTest" >/users/nomi/workspace/OBO/testlogs/CardinalityIntersectionTest.out 2>&1
CardinalityIntersectionTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.448 sec
ant runatest -
Djunit.test.class.name="org.obo.test.CardinalityTest" >/users/nomi/workspace/OBO/testlogs/CardinalityTest.out 2>&1
CardinalityTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.511 sec
ant runatest -
Djunit.test.class.name="org.obo.test.DanglingObjectTest" >/users/nomi/workspace/OBO/testlogs/DanglingObjectTest.out 2>&1
DanglingObjectTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.593 sec
ant runatest -
Djunit.test.class.name="org.obo.test.DisjointnessTest" >/users/nomi/workspace/OBO/testlogs/DisjointnessTest.out 2>&1
DisjointnessTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.837 sec
ant runatest -
Djunit.test.class.name="org.obo.test.DisjointnessTest2" >/users/nomi/workspace/OBO/testlogs/DisjointnessTest2.out 2>&1
DisjointnessTest2: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.648 sec
ant runatest -
Djunit.test.class.name="org.obo.test.FilterTest" >/users/nomi/workspace/OBO/testlogs/FilterTest.out 2>&1
FilterTest: Tests run: 7, Failures: 3, Errors: 0, Time elapsed: 1.314 sec
ant runatest -
Djunit.test.class.name="org.obo.test.FixedCacheMutableLinkDatabaseTest" >/users/nomi/workspace/OBO/testlogs/FixedCacheMutableLinkDatabaseTest.out 2>&1
FixedCacheMutableLinkDatabaseTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 1.576 sec
ant runatest -
Djunit.test.class.name="org.obo.test.GOAnnotationFilePlusOntologyTest" >/users/nomi/workspace/OBO/testlogs/GOAnnotationFilePlusOntologyTest.out 2>&1
GOAnnotationFilePlusOntologyTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 55.409 sec
ant runatest -
Djunit.test.class.name="org.obo.test.GOAnnotationFileTest" >/users/nomi/workspace/OBO/testlogs/GOAnnotationFileTest.out 2>&1
GOAnnotationFileTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 2.997 sec
ant runatest -
Djunit.test.class.name="org.obo.test.HoldsOverChainReasonerTest" >/users/nomi/workspace/OBO/testlogs/HoldsOverChainReasonerTest.out 2>&1
HoldsOverChainReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.404 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IDMapperTest" >/users/nomi/workspace/OBO/testlogs/IDMapperTest.out 2>&1
IDMapperTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 12.074 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IDMapperTestWithIDLifecycle" >/users/nomi/workspace/OBO/testlogs/IDMapperTestWithIDLifecycle.out 2>&1
IDMapperTestWithIDLifecycle: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 3.206 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IDMapperTestWithReasoner" >/users/nomi/workspace/OBO/testlogs/IDMapperTestWithReasoner.out 2>&1
IDMapperTestWithReasoner: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.789 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IDUpdateTest" >/users/nomi/workspace/OBO/testlogs/IDUpdateTest.out 2>&1
IDUpdateTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.723 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IntersectionBloodCellExampleTest" >/users/nomi/workspace/OBO/testlogs/IntersectionBloodCellExampleTest.out 2>&1
IntersectionBloodCellExampleTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 41.227 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IntersectionBloodCellExampleTestWithPellet" >/users/nomi/workspace/OBO/testlogs/IntersectionBloodCellExampleTestWithPellet.out 2>&1
IntersectionBloodCellExampleTestWithPellet: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.05 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IntersectionCamphorCatabolismExampleTest" >/users/nomi/workspace/OBO/testlogs/IntersectionCamphorCatabolismExampleTest.out 2>&1
IntersectionCamphorCatabolismExampleTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.891 sec
ant runatest -
Djunit.test.class.name="org.obo.test.IntersectionUsingSubRelationsTest" >/users/nomi/workspace/OBO/testlogs/IntersectionUsingSubRelationsTest.out 2>&1
IntersectionUsingSubRelationsTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.686 sec
ant runatest -
Djunit.test.class.name="org.obo.test.InverseAlwaysImpliedTest" >/users/nomi/workspace/OBO/testlogs/InverseAlwaysImpliedTest.out 2>&1
InverseAlwaysImpliedTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.785 sec
ant runatest -
Djunit.test.class.name="org.obo.test.LinkPileReasonerTest" >/users/nomi/workspace/OBO/testlogs/LinkPileReasonerTest.out 2>&1
LinkPileReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 12.655 sec
ant runatest -
Djunit.test.class.name="org.obo.test.NamespaceTest" >/users/nomi/workspace/OBO/testlogs/NamespaceTest.out 2>&1
NamespaceTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.774 sec
ant runatest -
Djunit.test.class.name="org.obo.test.OBDAnnotationSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDAnnotationSaveTest.out 2>&1
OBDAnnotationSaveTest: Tests run: 3, Failures: 0, Errors: 3, Time elapsed: 3.13 sec
ant runatest -
Djunit.test.class.name="org.obo.test.OBDPostcompSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDPostcompSaveTest.out 2>&1
OBDPostcompSaveTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 1.766 sec
ant runatest -
Djunit.test.class.name="org.obo.test.OBDQueryTest" >/users/nomi/workspace/OBO/testlogs/OBDQueryTest.out 2>&1
OBDQueryTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.346 sec
ant runatest -
Djunit.test.class.name="org.obo.test.OBDSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDSaveTest.out 2>&1
OBDSaveTest: Tests run: 3, Failures: 0, Errors: 3, Time elapsed: 2.037 sec
ant runatest -
Djunit.test.class.name="org.obo.test.PostcompSyntaxFileTest" >/users/nomi/workspace/OBO/testlogs/PostcompSyntaxFileTest.out 2>&1
PostcompSyntaxFileTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.024 sec
ant runatest -
Djunit.test.class.name="org.obo.test.PropertyIntersectionTest" >/users/nomi/workspace/OBO/testlogs/PropertyIntersectionTest.out 2>&1
PropertyIntersectionTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.708 sec
ant runatest -
Djunit.test.class.name="org.obo.test.ReasonerFilterTest" >/users/nomi/workspace/OBO/testlogs/ReasonerFilterTest.out 2>&1
ReasonerFilterTest: Tests run: 7, Failures: 4, Errors: 0, Time elapsed: 2.27 sec
ant runatest -
Djunit.test.class.name="org.obo.test.ReasonerRedundancyTest" >/users/nomi/workspace/OBO/testlogs/ReasonerRedundancyTest.out 2>&1
ReasonerRedundancyTest: Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.821 sec
ant runatest -
Djunit.test.class.name="org.obo.test.ReasonerRedundancyTest2" >/users/nomi/workspace/OBO/testlogs/ReasonerRedundancyTest2.out 2>&1
ReasonerRedundancyTest2: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.635 sec
ant runatest -
Djunit.test.class.name="org.obo.test.ReasonerTest" >/users/nomi/workspace/OBO/testlogs/ReasonerTest.out 2>&1
ReasonerTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0 sec
(may have timed out)
ant runatest -
Djunit.test.class.name="org.obo.test.ReasonerUndoRedoTest" >/users/nomi/workspace/OBO/testlogs/ReasonerUndoRedoTest.out 2>&1
ReasonerUndoRedoTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0 sec
(may have timed out)
ant runatest -
Djunit.test.class.name="org.obo.test.RedundancyTest" >/users/nomi/workspace/OBO/testlogs/RedundancyTest.out 2>&1
RedundancyTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.616 sec
ant runatest -
Djunit.test.class.name="org.obo.test.RelationPropertiesReasonerTest" >/users/nomi/workspace/OBO/testlogs/RelationPropertiesReasonerTest.out 2>&1
RelationPropertiesReasonerTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.64 sec
ant runatest -
Djunit.test.class.name="org.obo.test.RemoveRedundantLinksTest" >/users/nomi/workspace/OBO/testlogs/RemoveRedundantLinksTest.out 2>&1
RemoveRedundantLinksTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.596 sec
ant runatest -
Djunit.test.class.name="org.obo.test.SimpleReasonerTest" >/users/nomi/workspace/OBO/testlogs/SimpleReasonerTest.out 2>&1
SimpleReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.624 sec
ant runatest -
Djunit.test.class.name="org.obo.test.SubRelationReasonerTest" >/users/nomi/workspace/OBO/testlogs/SubRelationReasonerTest.out 2>&1
SubRelationReasonerTest: Tests run: 10, Failures: 0, Errors: 1, Time elapsed: 1.463 sec
ant runatest -
Djunit.test.class.name="org.obo.test.TransitivityTest" >/users/nomi/workspace/OBO/testlogs/TransitivityTest.out 2>&1
TransitivityTest: Tests run: 2, Failures: 1, Errors: 0, Time elapsed: 0.896 sec
ant runatest -
Djunit.test.class.name="org.obo.test.TrimmingLibraryTest" >/users/nomi/workspace/OBO/testlogs/TrimmingLibraryTest.out 2>&1
TrimmingLibraryTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 8.396 sec
ant runatest -
Djunit.test.class.name="org.obo.test.TrimmingTest" >/users/nomi/workspace/OBO/testlogs/TrimmingTest.out 2>&1
TrimmingTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 7.369 sec
ant runatest -
Djunit.test.class.name="org.obo.test.WebSearchUtilTest" >/users/nomi/workspace/OBO/testlogs/WebSearchUtilTest.out 2>&1
WebSearchUtilTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.521 sec
Begin time: Thu Apr 22 01:06:01 PDT 2010. End time: Thu Apr 22 01:35:56 PDT 2010
Output from tests is in /users/nomi/workspace/OBO/testlogs
Ran 43 obo unit tests. 24 passed.
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