May 21, 2013, 6:51:38 AM5/21/13
It's a trivial ask, but I want to run the command readBins on my chip sample with input and GC, mappability and N score.
I use the mm9 genome, I've downloaded your pre-processed files which are mm9_GC.txt for each chromosome separately and also mm9_map and mm9_N files.
For example : How can I process readBins(type=c("chip","M"),fileName=c("mySampleOnAllChromosomes","????")...) when I have 22 files for the type "M" ?
Must I process this command on each chromosome separatly ?! Or how can I make one file for all chromosomes in a good format for this command ?