GFF3 error :incorrect gff

[Juliana Chu]

Hello, there!

For the gff3 file, I have converted the gtf to gff3 file, with a script I wrote. However, it gives me errors for every line: WARNING - Error, incorrect gff. exon doesn't have valid mRNA b'CDS:AT1G01010:1', and with value error at the end :ValueError: not enough values to unpack (expected 2, got 1)

This is an example of my gff3 file:

I think it is mostly same format as the example give in workshop.

and this is my configuration file:

Is it wrong with the genome in the configuration file? or is my gff3 file still not complete? Please help me!

Thank you!

-Juliana

[Paul Jewell]

Hi Juliana, 

I'm thinking this is the same issue as the thread at https://groups.google.com/g/majiq_voila/c/5XIEfD-Zo9I . Is that correct? If so, I will close this one. 

Thanks, 

-Paul