One friend of mine, just send me a set of data including AA and DNA, and she ask me about Error 9
I tried the same set of data and I got exactly the same error after several minutes without echoing anything.
Subset Type Seqs Sites Infor Invar Model Name
1 DNA 128 1553 502 850 GTR+F+R5 part1
2 AA 95 1551 684 697 LG+F+R8 part2
Degree of missing data: 0.129
Info: multi-threading strategy over alignment sites
Killed: 9
Then I use the older version because I knew this mixed partition should work, and it worked flawlessly with the -spp (-p in the newer version) using the same nexus file she send me.
#nexus
begin sets;
charset part1 = 16S_128.phy : 1-1553;
charset part2 = rpoB_aa_95.phy : 1-1551;
charpartition mine = GTR+F+R5:part1, LG+F+R8:part2;
end;
It seems like a bug to me, but I might be wrong. I also tried -spp in different partition approaches (specifying AA and DNA, *), even without partition file using -p to the directory and I got at least 10 times the same error. This never happened before in version 1.6.12