a set of tree

[IQ-TREE]

Dear everyone,

I wonder, does IQtree provide a set of tree? In Mrbayes, there are set of tree in file named, run1 and run1.

Thank you in advance

Nich

[Bui Quang Minh]

Hi Nich,

IQ-TREE does maximum likelihood, which produces a single (point
estimate) of the tree.
But if you do bootstrapping, it will produce a set of trees. For
example, if you run -B 1000 (for ultrafast bootstrap), then you can
add -wbt option (for writing bootstrap trees without branch lengths)
or -wbtl option (for writing bootstrap trees with branch lengths).

This is perhaps what you have in mind...

Cheers
Minh

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