Hi,
I am trying to run an analysis of a multiple aligment in IQ-Tree, including a COI fragment gene, the third position of its codons is saturated (charset Subset3). How can I exclude this third position? These are the parementers indicated by PartitionFinder2:
#nexus
begin sets;
charset Subset1 = 1-1234;
charset Subset2 = 1913-2524\3 1914-2524\3 1235-1912\3 1236-1912\3;
charset Subset3 = 1237-1912\3;
charset Subset4 = 1915-2524\3;
charpartition PartitionFinder = TVM+I+G:Subset1, GTR+I+G:Subset2, TIM+I+G:Subset3, GTR+I+G:Subset4;
end;
Many thanks and stay healthy!
Fernando Carbayo