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<n20dal.phy>
Dear Minh:
Thank you very much to give me suggestion so soon.
Yes I using latest version 1.6.11, and test in win10 and win7.
The n20dal.phy file I tried to analysis is a degenerated matrix, that is a coding method for nucleotides in which codons in a data matrix are completely degenerated, for the first and third codon positions using ambiguity coding e.g., CAT -- . CAY and TTA--. YTN.
But IQ-tree detected: Alignment most likely contains protein sequences (not DNA), and try to use protein model to analysis and then failed.
I do not know whether it is the reason that –m MF requirement failed.
I test an amino acid matrix. It works after I enter iqtree –s aamatrix.phy
Is it possible to let IQ-tree recognize degenerated DNA matrix?
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