Hi,
Can you try the version v2.2.2.3 (from https://github.com/iqtree/iqtree2/releases) and see whether the issue still exists? Thanks.
Thomas
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Hi,
Because you would like to do bootstrapping, you should use "MFP" instead of "MF".
MFP: "Find best partition scheme followed by tree inference and bootstrap"
That means your syntax should be: iqtree2.exe -s Russula.fas -spp Partition.nex –m MFP+MERGE -bb 1000
Thomas
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Hi Aniket,
By the way, when I copied and pasted your command, it didn't work.
However, it worked when I typed the command again (exactly, but
changed to MF to MFP). I guess there were some hidden characters.
Thomas
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Hi Fabian,
The issue should have been addressed in the later version. Can you try the latest version, say v2.2.2.5, at https://github.com/iqtree/iqtree2/releases ?
Thomas
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