Determine Bootstrap support in given tree

[Carla Gonçalves]

Hi,

I have a  ML tree in which I just want to calculate the bootstrap support. I tested by running with the -te option but I am getting 100 bootstrap support in every node. I believe -te is not the correct option in this case?

Thanks,

[Carla Gonçalves]

On Friday, July 12, 2019 at 12:12:47 PM UTC+1, Carla Gonçalves wrote:

Hi,

I have a  ML tree in which I just want to calculate the bootstrap support (non-parametric bootstraps). I tested by running with the -te option but I am getting 100 bootstrap support in every node. I believe -te is not the correct option in this case?

Thanks,

[Minh Bui]

Hi Carla,

-te is NOT the right option here, because it fixes the tree topology of the user tree. That’s why you got 100% BS.

Do you want to give IQ-TREE some initial tree and then let it optimise the tree further? If so, just use -t option.

Cheers

Minh

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[Carla Gonçalves]

Hi Minh,

thank you, I think I just found the answer to my question in a previous thread:

https://groups.google.com/forum/#!msg/iqtree/000oT_wpuuk/YlITCOjpBwAJ

This is exactly what I am looking for.

Thank you!

On Monday, July 15, 2019 at 1:23:00 AM UTC+1, Minh Bui wrote:

Hi Carla,

-te is NOT the right option here, because it fixes the tree topology of the user tree. That’s why you got 100% BS.

Do you want to give IQ-TREE some initial tree and then let it optimise the tree further? If so, just use -t option.

Cheers

Minh

On 12 Jul 2019, at 9:12 pm, Carla Gonçalves <carla.i...@gmail.com> wrote:

Hi,

I have a  ML tree in which I just want to calculate the bootstrap support. I tested by running with the -te option but I am getting 100 bootstrap support in every node. I believe -te is not the correct option in this case?

Thanks,

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