iqtree -s paths_cut-gb.seq -sp partition_list.txt -m TESTMERGE -bb 5000 -nt AUTO -alrt 1000 -redo
However I keep getting the following error (end of log file):
ERROR: STACK TRACE FOR DEBUGGING:
ERROR: 1 funcAbort()
ERROR: 2 ()
ERROR: 3 pllPartitionsValidate()
ERROR: 4 IQTree::initializePLL(Params&)
ERROR: 5 startTreeReconstruction(Params&, IQTree*&, ModelCheckpoint&)
ERROR: 6 runPhyloAnalysis(Params&, Checkpoint*)
ERROR: 7 main()
ERROR: 8 __libc_start_main()
ERROR:
ERROR: *** IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT
ERROR: *** For bug report please send to developers:
ERROR: *** Log file: partition_list.txt.log
ERROR: *** Alignment files (if possible)
Begining of log file:
IQ-TREE multicore version 1.6.6 for Linux 64-bit built Feb 19 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.
Host: login1.pri.viking.alces.network (AVX512, FMA3, 187 GB RAM)
Command: iqtree -s paths_cut-gb.seq -sp partition_list.txt -m TESTMERGE -bb 5000 -nt AUTO -alrt 1000 -redo
Seed: 776800 (Using SPRNG - Scalable Parallel Random Number Generator)
Time: Wed Apr 22 10:33:40 2020
Kernel: AVX+FMA - auto-detect threads (40 CPU cores detected)
Reading partition model file partition_list.txt ...
Reading alignment file paths_cut-gb.seq ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
I have run this before with different sequences and not had any problems, I have checked the alignment and partition files and can't seem to find any problems. I have attached both these and the log file below.
Thank you!
--
You received this message because you are subscribed to the Google Groups "IQ-TREE" group.
To unsubscribe from this group and stop receiving emails from it, send an email to iqtree+un...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/iqtree/62157e5f-46d5-4c39-b4ac-3bb859f17b9e%40googlegroups.com.
<partition_list.txt><partition_list.txt.log><paths_cut-gb.seq>