IQ-TREE CRASHES WITH SIGNAL ABORTED while computing likelihood mappin

[Jacopo Martelossi]

Hi iq-tree users,

i got an error while computing FcLM with a mixed dataset (binary and nucleotides) and the -spp option either using the 1.7 beta 7 version and the 1.6.9 version.

command:

 iqtree-1.7-beta7 -spp RY.fill.cfg.best_scheme.nex -lmap 60000 -nt 4 -n 0

error:

Performing likelihood mapping with 60000 quartets...
Computing 60000 quartet likelihoods (one dot represents 100 quartets).

ERROR: phylotreepars.cpp:63: void PhyloTree::computePartialParsimonyFast(PhyloNeighbor *,phylotreepars.cpp PhyloNode *):: Assphylotreepars.cppertion `phylotreepars.cpp:!aln->ordered_pattern.empty():63' failed.: 6363
: : void PhyloTree::computePartialParsimonyFast(PhyloNeighbor *, PhyloNode *): Assertion `void PhyloTree::computePartialParsimonyFast(PhyloNeighbor *, PhyloNode *)void PhyloTree::computePartialParsimonyFast(PhyloNeighbor *, PhyloNode *): Assertion `
!aln->ordered_pattern.empty()!aln->ordered_pattern.empty(): Assertion `' failed.!aln->ordered_pattern.empty()
'ERROR: STACK TRACE FOR DEBUGGING:' failed.
ERROR: *** IQ-TREE CRASHES WITH SIGNAL ABORTED
 failed.


ERROR:
ERROR: *ERROR:
ERROR: *** IQ-TREE CRASH*** For bug report please send to developers:ES WITH SIGNAL ** IQ-TREE CRASHES WITH SIGNAL ABORTED
ABORTED
ERROR: *** For bug report please send to developers:
ERROR: ***    Log file: RY.fill.cfg.best_scheme.nex.log
*** For bug report please send to developers:
***    Log file: RY.fill.cfg.best_scheme.nex.log

ERROR: ***    Alignment files (if possible)ERROR: ***    Log file: RY.fill.cfg.best_scheme.nex.log
***    Alignment files (if possible)

***    Alignment files (if possible)
Aborted (core dumped)

best Jacopo

[Minh Bui]

Hi Jacopo,

Someone else also reported this (perhaps same) issue with the likelihood mapping. I could reproduce and localise the bug, but didn’t manage to fix that yet. But it is in my list now. So pls be patient and I’ll get back to you.

Thanks,

Minh

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