Help with model selection, protein mixture models

[Veronica Mantovani Bueno]

Hello all, 

I'm trying to use iqtree to find the best-fitting model for a protein dataset and I'd like to include Protein Mixture Models in the models considered.  

Here's the command I used:

iqtree -s ../04_alignments/03_trimmed/06_informed/01_coding_NUC/01_AA \
       -pre Subset1_test \
       -nt AUTO \
       -ntmax 40 \
       -m MF \
       -madd C10,C20,C30,C40,C50,C60,LG4M,LG4X,CF4

However, the protein mixture models were not considered during the search. Can you help with what's missing in the command to fix it?

thank you!

Veronica

[Bui Quang Minh]

Hi Veronia,

We're now moving to Github discussions. We'll close down Google group
in the near future; it is not even recommended anymore by Google.

Please post your question here:
https://github.com/iqtree/iqtree2/discussions and choose the category
as "Q&A".

Thanks
Minh

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