Hello,
I am trying to use IQ-Tree 1.6.6 for testing additional topologies.
When I run the "-g" option to construct the ML tree given a constrained topology, iq-tree becomes stuck at the following step: "Generating 99 parsimony trees". I already tested multiple datasets and the same happens in all of them.
I tested the same datasets in RAxML and everything works fine, so I believe it has nothing to do with the data itself.
I am using ~900 taxa so I was wondering if this has something to do with the fact that I am using a large dataset.
Thank you in advance!
Best,
Carla