Dear IQ-TREE developers team,
I'm trying to run a partitioned dataset analysis with topological backbone constraints, but I'm receiving an error.
Someone before me have encountered the same problem but I could not figure out how you solved it.
So I am as well pasting here are the first 10 and last 20 lines of the .log file:
########FIRST 10 LINES
IQ-TREE multicore version 1.5.2 for Linux 64-bit built Dec 3 2016
Copyright (c) 2011-2016 Nguyen Lam Tung, Olga Chernomor, Arndt von Haeseler and Bui Quang Minh.
Host: cl4n008 (AVX512, FMA3, 377 GB RAM)
Command: iqtree-omp -sp infileTE.nex -g das_kanga_vombat -nt 4 -bb 1000
Seed: 276396 (Using SPRNG - Scalable Parallel Random Number Generator)
Time: Thu Jan 3 15:09:44 2019
Kernel: AVX+FMA - 4 threads(72 CPU cores detected)
Reading partition model file infileTE.nex ...
Reading partition nt (model=GTR+I+G, aln=5nuclear_DIPROS.phy, seq=DNA, pos= 1-6060) ...
Reading alignment file 5nuclear_DIPROS.phy ... Phylip format detected
#######LAST 20 LINES
===> START BOOTSTRAP REPLICATE NUMBER 1
Creating bootstrap alignment (seed: 276396)...
CHECKPOINT: Initial tree restored
Ascertainment bias correction: 8 unobservable constant patterns
NOTE: 974 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
Optimizing GTR+F+I+G4 parameters for partition Duch (89 free parameters)
Optimizing GTR+F+I+G4 parameters for partition nt (223 free parameters)
Optimizing GTR+F+I+G4 parameters for partition loops (213 free parameters)
Optimizing GTR+F+I+G4 parameters for partition stems (213 free parameters)
Optimizing GTR+F+I+G4 parameters for partition m1 (221 free parameters)
Optimizing GTR+F+I+G4 parameters for partition m2 (221 free parameters)
Optimizing GTR2+FO+I+G4 parameters for partition m3 (214 free parameters)
Optimizing MK+FQ+ASC+G4 parameters for partition morpho (54 free parameters)
--------------------------------------------------------------------
| INITIALIZING CANDIDATE TREE SET |
--------------------------------------------------------------------
Generating 99 parsimony trees...
*** IQ-TREE CRASHES WITH SIGNAL ERRONEOUS NUMERIC
*** For bug report please send to developers:
*** Log file: infileTE.nex.log
*** Alignment files (if possible)
Would you be able to tell me how to fix my input files in order to make the software running properly? I shall specify that the constraints I am using are only forcing a few nodes of the trees and not all of them.
Thank you in advance for your consideration.
Cheers,
Manu