Hello,
Thank you for developing and maintaining iqtree, it's really the best!
Last month I posted a question to the google group about my problem but no answer yet. So, here I am again (seed etails below). Hopefully, you will see this and be able to help me.
I'm attaching the log file for reference. Also, I'm using iqtree2.
Hope you can help me.
Cheers,
Sheila
>>> Dataset
UCE data: 92 species and 1018 loci (75% complete matrix)
>>> Script
Partition-wise log-likelihood analysis
/home/sheilarm/iqtree-2.2.0-Linux/bin/iqtree2 \
-s /work/sheilarm/UCE-Gi/edit_analysis-July21/taxon-sets/dataset6/mafft-nexus-internal-trimmed-gblocks-clean-75p_6-raxml/mafft-nexus-internal-trimmed-gblocks-clean-75p_6-raxml.phylip \
-spp /work/sheilarm/UCE-Gi/edit_analysis-July21/taxon-sets/dataset6/IQTree-75_6/concaTree-75_6_best_scheme.nexus \
-z /work/sheilarm/UCE-Gi/edit_analysis-July21/taxon-sets/dataset6/IQTree-75_6/delta_6/concaTree-A1-75_6.tre \
--prefix /work/sheilarm/UCE-Gi/edit_analysis-July21/taxon-sets/dataset6/IQTree-75_6/delta_6/delta_concaTree-A1_6 \
-n 0 \
-zb 10000 \
-wpl \
-T 16
additional info: -s contains a phylip alignment, -spp contains alignment, partitions, and model for each partitition, -z contains 2 trees (concatenated ML tree and one of the alternative trees from the Concordant Factors analysis, also from iqtree)
>>> The problem:
For some reason, iqtree crashes when running both the topology test and the analysis of the most influential genes (attached here)
*** Error in `/home/sheilarm/iqtree-2.2.0-Linux/bin/iqtree2': double free or corruption (top): 0x0000000033656e20 ***======= Backtrace: =========
[0x9729d1]
[0x97b6c6]
[0x97f747]
[0x5122d3]
[0x51c0d2]
[0x51c2f3]
[0x402596]
[0x94fbd6]
[0x9501c5]
[0x408da9]
======= Memory map: ========
00400000-00c32000 r-xp 00000000 00:27 170819489 /home/sheilarm/iqtree-2.2.0-Linux/bin/iqtree2
. .
.
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]ERROR: STACK TRACE FOR DEBUGGING:
ERROR:
ERROR: *** IQ-TREE CRASHES WITH SIGNAL ABORTED
ERROR: *** For bug report please send to developers:
ERROR: *** Log file: /work/sheilarm/UCE-Gi/edit_analysis-July21/taxon-sets/dataset6/IQTree-75_6/delta_6/delta_concaTree-A1_6.log
ERROR: *** Alignment files (if possible)
/var/spool/torque/mom_priv/jobs/862123.smic3.SC: line 19: 12723 Aborted