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Hi Kuselah,It sounds like there is an error in your alignment file. If you can post the file here then we can take a look and advise. An example of an aligned fasta file is here:Rob
On Sat, 6 Jun 2020 at 17:39, Kuselah Tayaban <kmta...@gmail.com> wrote:
Hello all,--I'm using iq-tree for the first time. I have a sequence alignment in fasta format for reconstructing ML tree, but as I run it in iq-tree using the command iqtree -s gcspp.fas, it gives an error like this:Reading alignment file gcspp.fas ... ERROR: Cannot read file gcspp.fasI also tried it with phylip format, but still gives the same error. My sequences have same lengths, so what would be the possible problem? Sorry I can't find any answer/solution in the documentation online. Hope you guys can help...Thanks!
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Or perhaps because you ran IQ-TREE in a different folder, where this alignment does not exist?
Minh
On 9 Jun 2020, at 10:17 am, Rob Lanfear <rob.l...@gmail.com> wrote:
Hi Kuselah,It sounds like there is an error in your alignment file. If you can post the file here then we can take a look and advise. An example of an aligned fasta file is here:Rob
On Sat, 6 Jun 2020 at 17:39, Kuselah Tayaban <kmta...@gmail.com> wrote:
Hello all,I'm using iq-tree for the first time. I have a sequence alignment in fasta format for reconstructing ML tree, but as I run it in iq-tree using the command iqtree -s gcspp.fas, it gives an error like this:Reading alignment file gcspp.fas ... ERROR: Cannot read file gcspp.fasI also tried it with phylip format, but still gives the same error. My sequences have same lengths, so what would be the possible problem? Sorry I can't find any answer/solution in the documentation online. Hope you guys can help...Thanks!--
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--Rob Lanfear
Division of Ecology and Evolution,Research School of Biology,--
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