Hi all,
After successfully creating the varsites file we ran across the following error while using iqtree2 v 2.1.2, 2.1.3 and 2.1.4-beta (all fresh runs from scratch):
ERROR: alignment.cpp:77: std::__cxx11::string
&Alignment::getSeqName(int): Assertion `i >= 0 && i <
(int)seq_names.size()' failed.
ERROR: STACK TRACE FOR DEBUGGING:
ERROR:
ERROR: *** IQ-TREE CRASHES WITH SIGNAL ABORTED
ERROR: *** For bug report please send to developers:
ERROR: *** Log file: AS.pruning-0.5.log
ERROR: *** Alignment files (if possible)
I am attaching the log file in the case of version 2.1.3
AS.pruning-0.5.log
We also tried with "-keep_empty_seq" without any luck.
Could you please help us in handling this error?
Thanks in advance.
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