the / separating the support values are replace by _

[jp.fland...@gmail.com]

Hi

in the documentation and locally in the .iqtree file it is said that 

"Numbers in parentheses are SH-aLRT support (%) / aBayes support / ultrafast bootstrap support (%)"

but we got this

|                                                        +--Francisella_sp..GCA_000219045.1

|                                                     +--| (99.5_1_90)

and in the .treefile:

Francisella_noatune..GCA_001042525.2:0.0000000000):0.0000022621,Francisella_noatune..GCA_001042565.2:0.0000022621)0_0.333_93:0.0000022621)0_0.333_31:0.0000022621,Francisella_noatune..GCA_001648045.1:0.0000022621)0_0.333_93:0.0000022621,Francisella_noatune..GCA_000262205.1:0.0000022621)100_1_100:0.0010814537,Francisella_philomi..GCA_000833255.1:0.0000841839)99.7_1_100:0.0010361213)99.9_1_100:0.0021257903)99.5_1_90:0.0025648547,((Francisella_sp..GCA_001895265.1:0.0016935363, 

I wonder if the change is deliberate or not... the version is IQ-TREE 1.6.5 built May  8 2018 (MasOS)

JPF

Pr. emer.  JP Flandrois MD, PhD

Univ  Lyon. LBBE Laboratoire de Biometrie et Biologie Evolutive - http://lbbe.univ-lyon1.fr/

[Minh Bui]

Hi JPF,

Many thanks for reporting this! This is a bug in v1.6.5 (not present in v1.6.4) due to a quick change that replaces odd characters in taxon names to underscore. But it has an unwanted effect of also replacing internal node names from slash to underscore. That’s why you see these underscores, but all support values are correct. We will fix this soon… sorry for this inconvenience. For the moment you can revert to v1.6.4.

Cheers

Minh

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[jp.fland...@gmail.com]

Hi Minh
I will revert to 1.6.4 because all the wraper is using the / tag to compute a composite unique index of satisfaction :) too complicated to change quickly.

Thanks for the rapide answer.

JPF