Dear users,
David Maddison has nicely added support for running IQ-TREE within Mesquite software version 3.5 (
http://www.mesquiteproject.org). After installing Mesquite, you need to install Zephyr package to interact with IQ-TREE and other phylogenetic software. You can then choose to run IQ-TREE from the “Analysis” menu for your data matrix (screen shot below).
Mesquite is very handy and user-friendly, e.g. resulting tree will be automatically displayed on screen right after the analysis is done. Therefore, we really recommend Mesquite especially if you’re not familiar with the command line.
Best,
IQ-TREE development team