iqtree -s ${InputAlignment} -nt ${SLURM_CPUS_PER_TASK} -spp ${PartitioningScheme} -mset LG+G,WAG+G,DCMUT+G,JTT+G,BLOSUM62+G,LG+G+F,WAG+G+F,DCMUT+G+F,JTT+G+F,BLOSUM62+G+F,LG4X -m TESTMERGE -rcluster-max 2000 -rcluster 10 -alrt 1000 -bb 1000 -bnni -pre ${SLURM_JOB_NAME}
which gives me following error:
ERROR: ratefree.cpp:537: double RateFree::optimizeWithEM(): Assertion `score > old_score-0.1' failed.iqtree -s ${InputAlignment} -nt ${SLURM_CPUS_PER_TASK} -spp ${PartitioningScheme} -mset BLOSUM62+G+F,LG4X -m TESTMERGE -rcluster-max 2000 -rcluster 10 -alrt 1000 -bb 1000 -bnni -pre ${SLURM_JOB_NAME}
iqtree -s ${InputAlignment} -nt ${SLURM_CPUS_PER_TASK} -spp ${PartitioningScheme} -mset LG+G,WAG+G,DCMUT+G,JTT+G,BLOSUM62+G,LG+G+F,WAG+G+F,DCMUT+G+F,JTT+G+F,BLOSUM62+G+F -m TESTMERGE -rcluster-max 2000 -rcluster 10 -alrt 1000 -bb 1000 -bnni -pre ${SLURM_JOB_NAME}
or
iqtree -s ${InputAlignment} -nt ${SLURM_CPUS_PER_TASK} -spp ${PartitioningScheme} -m LG4X -alrt 1000 -bb 1000 -bnni -pre ${SLURM_JOB_NAME}
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