how to use locally

[Ouhao Lin]

thanks a lot.
I have two questions want to know
1:
after installing UTA and SeqRepo
and add the following two env variable to my ~/.bashrc
export HGVS_SEQREPO_DIR=/usr/local/share/seqrepo/20160906
export UTA_DB_URL=postgresql://anonymous@localhost:15032/uta/uta_20170117.

and will all the command when I use hgvs functions, the package will use all local database automaticlly?

or should I set db_url or something else?
hgvs.dataproviders.uta.connect(db_url=None, pooling=False, application_name=None, mode=None, cache=None)

2: must this packages know the small version of a transcript, for example
NM_001166478.1:c.35_36insT, can the input be NM_001166478:c.35_36insT ?

3 can you give me a md5 value of seqrepo, due to it is so big, I want to check the file when downloaded

[Ouhao Lin]

when I do import hgvs.dataproviders.uta, it gives the following error.

import.im6: unable to grab mouse `': Resource temporarily unavailable @ error/xwindow.c/XSelectWindow/9047.

在 2019年12月7日星期六 UTC+8下午12:50:56，Ouhao Lin写道：

[Reece Hart]

1. Setting `db_url=None` should work. It's easier to not include it in the parameters.

2. Transcript version numbers are required because the exon structure can change between versions

3. No, I can't do this easily. It is a good idea.

4. The X mouse grab error is unrelated to hgvs and uta. You'll have to look elsewhere.

-Reece

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[Ouhao Lin]

I just do as the guide told me , first docker pull, then export the port the default setting.

the 50827 comes from I test the code you supplied in this link https://github.com/biocommons/uta/

here is a new try today

在 2019年12月7日星期六 UTC+8下午12:50:56，Ouhao Lin写道：

thanks a lot.