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This mailing list is for discussion on the use of the software GEMMA (Genome-wide Efficient Mixed Model Association). Announcements and updates about GEMMA will also be posted to this mailing list.

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Jul 10

Hello I am running GEMMA LMM with the following command: sbatch -n 1 --mem-per-cpu=10000 --time=12:00

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Hello I am running GEMMA LMM with the following command: sbatch -n 1 --mem-per-cpu=10000 --time=12:00

Jul 10

May 16

Input Genotype file looks okay but still getting error

Dear concerned, I have been running gemma, but I am getting the following error, although the input

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Input Genotype file looks okay but still getting error

Dear concerned, I have been running gemma, but I am getting the following error, although the input

May 16

May 13

Interpretation of PGE and rho in BSLMM

Hello! I was wondering if someone could share any clarification on the specific differences between

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Interpretation of PGE and rho in BSLMM

Hello! I was wondering if someone could share any clarification on the specific differences between

May 13

Aditi Prasad, Anna Gatseva2

May 7

Input files look okay but still getting error

Hello, I am also getting the same error ERROR: Enforce failed for number of analyzed individuals

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Input files look okay but still getting error

Hello, I am also getting the same error ERROR: Enforce failed for number of analyzed individuals

May 7

Apr 15

GSL ERROR: matrix is singular in lu.c at line 449 errno 1

Hi, I am trying to fit a linear mixed effect model with correlated phenotypes (pre-transformed to

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GSL ERROR: matrix is singular in lu.c at line 449 errno 1

Hi, I am trying to fit a linear mixed effect model with correlated phenotypes (pre-transformed to

Apr 15

Shadi Nayeri, Jeremy Sutherland2

Feb 29

Phenotype format in case of having multiple samples associated with each genotype

Did you get an answer to this question? I have a similar situation. On Wednesday, September 15, 2021

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Phenotype format in case of having multiple samples associated with each genotype

Did you get an answer to this question? I have a similar situation. On Wednesday, September 15, 2021

Feb 29

Feb 29

Detailed Explanation of rpace and wpace flags for BSLMM model

Hello, Apologies if this explained somewhere else, but I can't find any further information than

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Detailed Explanation of rpace and wpace flags for BSLMM model

Hello, Apologies if this explained somewhere else, but I can't find any further information than

Feb 29

Jeff Groh, Michael Nagle2

Feb 20

Missing p values for SNPs that are perfectly associated with trait

If I understand right, you have a situation where R^2 = 1 for the relationship between your trait and

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Missing p values for SNPs that are perfectly associated with trait

If I understand right, you have a situation where R^2 = 1 for the relationship between your trait and

Feb 20

Nicolas Alexandre, Xiang Zhou2

Feb 19

Units for effect size

The units are based on the genotypes provided in the input genotype file. Specifically, if the

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Units for effect size

The units are based on the genotypes provided in the input genotype file. Specifically, if the

Feb 19

Johan Zicola, Xiang Zhou3

Feb 14

Why main diagonal of gemma relatedness matrix is not equal to 1

Thanks Zhou! Could you indicate in which case you would use the centered relatedness matrix? It is

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Why main diagonal of gemma relatedness matrix is not equal to 1

Thanks Zhou! Could you indicate in which case you would use the centered relatedness matrix? It is

Feb 14

Feb 12

Using GEMMA for multi-tissue eQTL analysis

Greetings, I've read in several papers that GEMMA could be used for eQTL analysis combining data

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Using GEMMA for multi-tissue eQTL analysis

Greetings, I've read in several papers that GEMMA could be used for eQTL analysis combining data

Feb 12

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