job ID: 630618

[Jongyun Jung]

Dear FUMA Support Team,

I have a job error of ERROR:005. After checking the message sent after the job failed, I have a further question about my job.

My snp column is snpid in my file and having a format of chr:position:Ref:Alt. 

I have a few significant SNPs in my data set, but I'm not sure why my job was failed to draft the plots. 

Could you please take a look at my job ID: 630618?

Thank you for your help in advance!

[Tanya Phung]

Hi Jongyun, 

FUMA detected these SNPs to have the lowest p values in your file: 

the p value of the top SNP is 8e-8 which is larger than the genome-wide significant threshold of 5e-8. 

I have answered a similar question here: https://groups.google.com/g/fuma-gwas-users/c/BL1HabLYuCU/m/Nfko7vjwAAAJ

Best,
Tanya

[Jongyun Jung]

Hi Tanya,

Thank you for your response!

I submitted with a lower threshold (job IDs: 631308 and 631303), but this time I'm receiving an error message due to the time limit (8 hours). Is there a way I can run this job with additional time?

Thank you!

[Tanya Phung]

Hi Jongyun, 

At this time, 8 hours per job is the limit.

I saw that in job 631308 you set the genome-wide threshold to be 1e-5. Maybe you can use 1e-7. However, keep in mind that we do not advise/provide interpretation/be responsible to your results.

You can also split the files to smaller chunks if you are encountering timeout error. 

Best,
Tanya