SNP2GENE Job ERROR:005

[windflow Ἀλέξανδρος]

Hi,

I was trying to run the SNP2GENE (Job ID 559187, 559145,559092,559076,559070,559063) but got the ERROR:005. Can you please check and let me know what to do?
Thanks,
Min

[Tanya Phung]

Hello, 

From FUMA tutorial: https://fuma.ctglab.nl/tutorial#parameters

Specifically:

It looks like none of your topSNPs have p values that pass the genome-wide significant threshold of 5e-8. This is typically the threshold used in GWAS. You can manually decrease the threshold as suggested in the tutorial but we are not responsible for the results and interpretation of your scientific studies. 

Below is the top 10 SNPs sorted by p values. As you can see, none of these variants have p values < threshold of 5e-8. 
Job 559187

p
1.38707517797e-07
1.77705144231e-07
4.03273792976e-07
4.4483607489e-07
4.55092837085e-07
4.57720116705e-07
6.69730380542e-07
7.80728440138e-07
8.18276351348e-07
8.42170452198e-07

Job 559145

p
3.05492111322e-07
3.61909513884e-07
3.86189089449e-07
3.88866024331e-07
7.39094550252e-07
8.04081370121e-07
9.44060876286e-07
9.85144642804e-07
1.1295357995e-06
1.23225332872e-06

Job 559092

p
6.61911611941e-08
1.43449817479e-07
1.58379876507e-07
2.43332433836e-07
3.02621653576e-07
3.09456778399e-07
4.4926232467e-07
4.53001875432e-07
4.69894108605e-07
4.86295219187e-07

Job 559076

p
1.22123713017e-07
1.32892355713e-07
1.58489319246e-07
2.58344963926e-07
2.84904953391e-07
3.34272000138e-07
3.49059932205e-07
3.77137745011e-07
3.79227654525e-07
3.92373799545e-07

Job 559070
p
9.7543874044e-08
1.03062340293e-07
1.30677254058e-07
1.41058739931e-07
1.45010683642e-07
1.51739972143e-07
1.73940213978e-07
1.90502201993e-07
2.03376139843e-07
2.43276410922e-07

Job 559063

p
1.91822700173e-07
2.0734807129e-07
2.22228625433e-07
2.33883723866e-07
2.40159626789e-07
3.14485046548e-07
4.20145774399e-07
4.60892880981e-07
7.09414400453e-07
7.35021427647e-07

[windflow Ἀλέξανδρος]

Thanks again for your answer!
Min