The FX2 boot loader supports two I²C-compatible EEPROM types:
* EEPROMs with slave address 1010 that use an 8-bit internal address (e.g., 24LC00, 24LC01/B, 24LC02/B).
* EEPROMs with slave address 1010 that use a 16-bit internal address (e.g., 24AA64,24LC128, 24AA256).
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The code in prom.c dates back to late 2008 or so, well before FPGALink existed. So, I don't remember my reasons for not using the fxlib EEPROM code, but it was probably because I wasn't aware of its existence.
Anyway, glad you got it fixed.