Trainable Segmentation mini-hackathon wrap-up

Johannes Schindelin

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Apr 23, 2013, 6:37:08 PM4/23/13

to ima...@list.nih.gov, fi...@fiji.sc

Dear fans of the Trainable Segmentation,

I wrote a blog post about a mini-hackathon with Ignacio Arganda-Carreras,
the maintainer of the Trainable Segmentation plugin. You might be
interested where things are going...

Ciao,
Johannes

Lee Kamentsky

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Apr 24, 2013, 7:40:22 AM4/24/13

to Johannes Schindelin, ima...@list.nih.gov, fi...@fiji.sc

Hey Dscho - do you want to share the link?

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Kevin W Eliceiri

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Apr 24, 2013, 7:42:00 AM4/24/13

to Lee Kamentsky, Johannes Schindelin, ima...@list.nih.gov, fi...@fiji.sc

Hi Lee,

Its here:
http://developer.imagej.net/2013/04/22/trainable-segmentation-hackathon

best
kevin

On 04/24/13, Lee Kamentsky wrote:
> Hey Dscho - do you want to share the link?
>
>
> On Tue, Apr 23, 2013 at 6:37 PM, Johannes Schindelin <fiji-devel+...@googlegroups.com <Johannes....@gmx.de')" target="1">Johannes....@gmx.de> wrote:
>
> > Dear fans of the Trainable Segmentation,
> >
> > I wrote a blog post about a mini-hackathon with Ignacio Arganda-Carreras,
> > the maintainer of the Trainable Segmentation plugin. You might be
> > interested where things are going...
> >
> > Ciao,
> > Johannes
> >
> > --
> > --
> > Please avoid top-posting, and please make sure to reply-to-all!
> >
> > Mailing list web interface: http://groups.google.com/group/fiji-devel
> >
> > ---
> > You received this message because you are subscribed to the Google Groups "Fiji-devel" group.

> > To unsubscribe from this group and stop receiving emails from it, send an email to https://groups.google.com/groups/opt_out(javascript:main.compose('new', 't=fiji-devel+...@googlegroups.com>.
> > For more options, visit

>
>
>
>
>
> --
> --
> Please avoid top-posting, and please make sure to reply-to-all!
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Kevin W. Eliceiri
Director, Laboratory for Optical and Computational Instrumentation (LOCI)
Departments Cell and Molecular Biology and Biomedical Engineering
Affiliate Principal Investigator, Morgridge Institute for Research (MIR)
Room 271 Animal Sciences, 1675 Observatory Drive, Madison, WI 53706
Phone: 608-263-6288

Johannes Schindelin

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Apr 24, 2013, 1:07:33 PM4/24/13

to elic...@wisc.edu, Lee Kamentsky, ima...@list.nih.gov, fi...@fiji.sc

Hi Kevin,

On Wed, 24 Apr 2013, Kevin W Eliceiri wrote:

> Its here:
> http://developer.imagej.net/2013/04/22/trainable-segmentation-hackathon

Thanks! I have a little trouble with copy & paste recently, indeed,
sometimes things do not get into the clipboard properly.

For the record, the blog I am talking about is here:

http://developer.imagej.net/blog

Ciao,
Dscho

Larry Lindsey

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Apr 24, 2013, 1:27:17 PM4/24/13

to Kevin Eliceiri, Lee Kamentsky, Johannes Schindelin, ima...@list.nih.gov, Fiji Developers

On Wed, Apr 24, 2013 at 6:42 AM, Kevin W Eliceiri <elic...@facstaff.wisc.edu> wrote:

Hi Lee,

Its here:
http://developer.imagej.net/2013/04/22/trainable-segmentation-hackathon

This looks excellent. Is this in master already, or some other branch in fiji?

Cheers,

Larry

Johannes Schindelin

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Apr 24, 2013, 1:37:35 PM4/24/13

to Larry Lindsey, Kevin Eliceiri, Lee Kamentsky, ima...@list.nih.gov, Fiji Developers

Hi Larry,

It is in a branch in Fiji. We plan not to merge it into 'master' before
ImgLib2-ification (there is another mini-hackathon coming up next week
during which I hope to get this process started): otherwise, we would have
to support API that I would like not to support.

The branch in question is:

https://github.com/fiji/fiji/commits/aws-unit-test

There is also second branch we created, to start improving the
performance, but we're not quite sure where this will go (there are
possible threading issues there):

https://github.com/fiji/fiji/commits/aws-weka-instance

Please keep in mind that I consider these branches to be fair game when it
comes to completely rewriting them, breaking the API introduced, etc...
;-)

Ciao,
Dscho

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