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Fiji-devel

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10/14/15

This group is closed. Please use the ImageJ Forum instead.

Hi everyone, The vote to close fiji-devel was unanimous: 26/26 people voted to close the fiji-devel

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This group is closed. Please use the ImageJ Forum instead.

Hi everyone, The vote to close fiji-devel was unanimous: 26/26 people voted to close the fiji-devel

10/14/15

11/2/15

Re: help with 3D segmentation

Hi Albert, Thank you again for your reply. On 02/11/2015 3:59 PM, Albert Cardona wrote: Last I

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Re: help with 3D segmentation

Hi Albert, Thank you again for your reply. On 02/11/2015 3:59 PM, Albert Cardona wrote: Last I

11/2/15

10/23/15

TrakEM2 to BigDataViewer

Thank you Stephan, that looks exactly like what I wanted. Best regards Thomas On 10/20/2015 8:38 PM,

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TrakEM2 to BigDataViewer

Thank you Stephan, that looks exactly like what I wanted. Best regards Thomas On 10/20/2015 8:38 PM,

10/23/15

CHICHEN FU, Albert Cardona3

10/14/15

Question about correct drift 3D plugin

Thank you. On Tuesday, October 13, 2015 at 3:38:05 PM UTC-4, leafw wrote: See: "Sample Drift

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Question about correct drift 3D plugin

Thank you. On Tuesday, October 13, 2015 at 3:38:05 PM UTC-4, leafw wrote: See: "Sample Drift

10/14/15

10/14/15

Help debugging plugin run via java server / Class not found error

My high level goal is to call a Fiji plugin via JNI from a C++ program. In particular I have tried to

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Help debugging plugin run via java server / Class not found error

My high level goal is to call a Fiji plugin via JNI from a C++ program. In particular I have tried to

10/14/15

10/12/15

Re: Fiji Cookbook

Hi Lori, Please use "reply all" to keep the list in CC. Or switch to the ImageJ forum (http

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Re: Fiji Cookbook

Hi Lori, Please use "reply all" to keep the list in CC. Or switch to the ImageJ forum (http

10/12/15

10/9/15

Retire the imagej-devel and fiji-devel lists?

Hello ImageJ and Fiji enthusiasts, As you all probably noticed, we now have a nice web forum for

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Retire the imagej-devel and fiji-devel lists?

Hello ImageJ and Fiji enthusiasts, As you all probably noticed, we now have a nice web forum for

10/9/15

Praveen Krishnamoorthy, Jean-Yves TINEVEZ4

10/9/15

help with Trackmate

It's explained here: http://fiji.sc/2014-06-02_-_TrackMate_v2.3.0_released -- Jean-Yves Tinevez

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help with Trackmate

It's explained here: http://fiji.sc/2014-06-02_-_TrackMate_v2.3.0_released -- Jean-Yves Tinevez

10/9/15

Mark Hiner, Curtis Rueden2

10/5/15

Re: jvm.cfg for Fiji

Hi Les, > I was going to turn down the log level to “WARN” for example, just to > see how well

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Re: jvm.cfg for Fiji

Hi Les, > I was going to turn down the log level to “WARN” for example, just to > see how well

10/5/15

10/5/15

ImageJ plugin development

Hi Chris, I'm reposting your discussion from the Talk:Welcome page to the fiji-devel mailing list

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ImageJ plugin development

Hi Chris, I'm reposting your discussion from the Talk:Welcome page to the fiji-devel mailing list

10/5/15

Tobias Pietzsch, Saalfeld, Stephan3

10/2/15

API-breaking change in SpimData and BigDataViewer projects

Great! Just in time for the hackathon next week. We will miss you! Cheers, Stephan On Thu, 2015-10-01

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API-breaking change in SpimData and BigDataViewer projects

Great! Just in time for the hackathon next week. We will miss you! Cheers, Stephan On Thu, 2015-10-01

10/2/15

Thomas, Tobias Pietzsch4

10/1/15

Smoother BigDataViewer navigation

Hi, I realized that one can navigate in BDV simply by setting the 3d transform of the viewer (my

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Smoother BigDataViewer navigation

Hi, I realized that one can navigate in BDV simply by setting the 3d transform of the viewer (my

10/1/15

Thomas, Stephan Saalfeld5

10/1/15

Parallel SIFT features extraction

And for the record, here is the minimalistic python script that computes in parallel the features of

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Parallel SIFT features extraction

And for the record, here is the minimalistic python script that computes in parallel the features of

10/1/15

9/22/15

Re: Pushed v 1.0.3 of H5J Plugin

Les, There are two general pull request paradigms: 1. Internal: within a single repository. This

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Re: Pushed v 1.0.3 of H5J Plugin

Les, There are two general pull request paradigms: 1. Internal: within a single repository. This

9/22/15

9/22/15

roiManager("measure") NullPointerException

Dear all, I am trying to write a macro to export line ROIs from many tif overlays in a directory, one

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roiManager("measure") NullPointerException

Dear all, I am trying to write a macro to export line ROIs from many tif overlays in a directory, one

9/22/15

9/21/15

ImageJ Discourse Forum

Hi everyone, We have set up a web-based forum for ImageJ: http://forum.imagej.net/ It is driven by

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ImageJ Discourse Forum

Hi everyone, We have set up a web-based forum for ImageJ: http://forum.imagej.net/ It is driven by

9/21/15

Pushkar Paranjpe, Curtis Rueden3

9/17/15

Keyboard input fail

Hi Pushkar, OK, then that is a bug I have never seen before. You could try taking a stack trace [1]

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Keyboard input fail

Hi Pushkar, OK, then that is a bug I have never seen before. You could try taking a stack trace [1]

9/17/15

9/4/15

Fiji: Trainable segmentation

Hi Anne, After seeing your lightning talk, one tool that came to mind is the Trainable Segmentation

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Fiji: Trainable segmentation

Hi Anne, After seeing your lightning talk, one tool that came to mind is the Trainable Segmentation

9/4/15

Emanuele Martini

9/4/15

Hi to all, I would ask you if is it possible to programmatically (using macro laguages or plugin )

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Hi to all, I would ask you if is it possible to programmatically (using macro laguages or plugin )

9/4/15

Mark Hiner, Leslie Foster4

9/2/15

Re: Just Pushed Update of H5J_Loader_Plugin, to version 1.0.2

Mark: I am posting here, from my gmail account. Perhaps that is the one that belongs to this group?

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Re: Just Pushed Update of H5J_Loader_Plugin, to version 1.0.2

Mark: I am posting here, from my gmail account. Perhaps that is the one that belongs to this group?

9/2/15

Jean-Yves Tinevez, Curtis Rueden5

8/31/15

Fiji wiki account creation page is broken.

*facepalm* De : fiji-...@googlegroups.com [mailto:fiji-...@googlegroups.com] De la part de Jean-

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Fiji wiki account creation page is broken.

*facepalm* De : fiji-...@googlegroups.com [mailto:fiji-...@googlegroups.com] De la part de Jean-

8/31/15

Ilan, Mark Hiner3

8/27/15

can't exit fiji

Hi Mark, I received an update and the problem is fixed. Thanks, Ilan

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can't exit fiji

Hi Mark, I received an update and the problem is fixed. Thanks, Ilan

8/27/15

Tim Dahmen, Curtis Rueden2

8/26/15

plugin code organisation using script editor

Hi Tim, The Script Editor is not designed to handle plugins beyond a single source file. If your

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plugin code organisation using script editor

Hi Tim, The Script Editor is not designed to handle plugins beyond a single source file. If your

8/26/15

8/25/15

Measurement of perfusion

I would like to know if it ist possible that when i have a CT Image- sequence to measure the

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Measurement of perfusion

I would like to know if it ist possible that when i have a CT Image- sequence to measure the

8/25/15

Roger Leigh, Curtis Rueden3

8/17/15

Fiji bundling of Java >1.6

Hi Roger, > I saw some past discussions regarding updating the bundled JVM from > 1.6 to 1.7 (

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Fiji bundling of Java >1.6

Hi Roger, > I saw some past discussions regarding updating the bundled JVM from > 1.6 to 1.7 (

8/17/15

Preston McFarland, Ignacio Arganda-Carreras2

8/16/15

Unsupervised Image Classification using Trainable Weka Segmentation

Dear Preston, TWS does pixel classification, not image classification, so I'm afraid you might

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Unsupervised Image Classification using Trainable Weka Segmentation

Dear Preston, TWS does pixel classification, not image classification, so I'm afraid you might

8/16/15

Stephan Preibisch, Curtis Rueden3

8/14/15

Upload to Fiji fails

Thanks so much Curtis, it just worked! All the best, Stephan On 14 Aug 2015, at 22:29, Stephan

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Upload to Fiji fails

Thanks so much Curtis, it just worked! All the best, Stephan On 14 Aug 2015, at 22:29, Stephan

8/14/15

8/13/15

Re: Latest H5j Loader Plugin Release

>If there is more I need to do to ensure a release happens, please let me know. Pushing the tag

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Re: Latest H5j Loader Plugin Release

>If there is more I need to do to ensure a release happens, please let me know. Pushing the tag

8/13/15

Niko Ehrenfeuchter, … Curtis Rueden4

8/11/15

Directories and suffixes covered by the updater.

Thank you Jan! Might be good to put a link to the canonical list, in the source: https://github.com/

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Directories and suffixes covered by the updater.

Thank you Jan! Might be good to put a link to the canonical list, in the source: https://github.com/

8/11/15

rha...@mpi-cbg.de, Curtis Rueden3

8/11/15

FIJI Performance issues after Update mid of July (MacOS, Java 1.6 / 1.8)

Hi Robert, > Can you roughly predict, when the new JavaFX launcher will come? The goal was to have

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FIJI Performance issues after Update mid of July (MacOS, Java 1.6 / 1.8)

Hi Robert, > Can you roughly predict, when the new JavaFX launcher will come? The goal was to have

8/11/15

8/10/15

Janelia hackathon

Hi all, For those interested, Curtis and I spent the last week of July in Janelia for hackathon, at

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Janelia hackathon

Hi all, For those interested, Curtis and I spent the last week of July in Janelia for hackathon, at

8/10/15

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