Hi Frank,
Thank you so much for your very helpful advice! The nii scalars for qa, nqa, and gfa are exactly what I'm looking for.
The problem I'm having now is that I can output gfa, qa, and rdi, but not nqa. When I try to export nqa, it produces an "ERROR: cannot find nqa in fib.gqi.1.25.fib.gz"
I also tried running it locally and received the same error.
The reconstruction command line I'm using is:
dsi_studio --action=rec --source=*.src.gz --method=4 --param0=1.25 --other_output=qa,nqa,gfa,rdi --output=fib
I've tried it in a few different "outher_output" configurations, and nqa still won't export when I run:
dsi_studio --action=exp --source=*.gqi.1.25.fib.gz --export=nqa
But it works for all other metrics except nqa. I'm running the latest version of DSI studio both on the cluster (dsistudio_latest.sif) and locally (Dec 16th, 2022). Any advice?
Thanks again for your help!
Best,
Dea