Count in cluster one

razi.b...@gmail.com

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Nov 12, 2018, 2:56:57 PM11/12/18

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How to count the number of clusters each node belong them in cluster one?

Alex Pico

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Nov 12, 2018, 2:59:23 PM11/12/18

to cytoscape-helpdesk, Tamas Nepusz

Cc’ing the author of the ClusterOne app...

- Alex

On Nov 11, 2018, at 4:49 AM, razi.b...@gmail.com wrote:

How to count the number of clusters each node belong them in cluster one?

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Tamás Nepusz

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Nov 13, 2018, 2:57:13 PM11/13/18

to Alex Pico, cytoscape-helpdesk

I don’t think there’s an option for it in the plugin itself — you need to export the clustering from the result panel in the default line-oriented format and then do some post-processing outside Cytoscape with your weapon of choice (Excel, shell scripts, black magic etc)

T.

Bernhard

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Nov 14, 2018, 2:48:36 PM11/14/18

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Hi Razi, Tamas is right, there is no specific function to do this but with the exported data you can find all the answers to your questions.

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