Linux installation problem DynaLoader Module

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ak

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Dec 13, 2011, 1:34:54 PM12/13/11
to Circos
I have installed all the perl packages listed in
http://circos.ca/tutorials/lessons/configuration/perl_and_modules/,
and checked that all of them are up-to-date.
But when I run the circos executable, I get the following error:


object version 2.46 does not match $::VERSION %_ at /users/ak/perl5/
lib/perl5/DynaLoader.pm line 213.
Compilation failed in require at /users/ak/perl5/lib/perl5/x86_64-
linux-ld/GD/Polyline.pm line 45.
BEGIN failed--compilation aborted at /users/ak/perl5/lib/perl5/x86_64-
linux-ld/GD/Polyline.pm line 45.
Compilation failed in require at /u1/home/ak/circos/circos-0.55/bin/../
lib/Circos.pm line 58.
BEGIN failed--compilation aborted at /u1/home/ak/circos/circos-0.55/
bin/../lib/Circos.pm line 58.
Compilation failed in require at ./bin/circos line 184.
BEGIN failed--compilation aborted at ./bin/circos line 184.


It seems that i don't have the correct version of DynaLoader. I am
wondering if there is a comprehensive solution to this.
If I try installing DynaLoader using CPAN, I get:

Running install for module 'DynaLoader'
The most recent version "1.15" of the module "DynaLoader"
is part of the perl-5.8.6 distribution. To install that, you need to
run
force install DynaLoader --or--
install N/NW/NWCLARK/perl-5.8.6.tar.gz
Running make test
Can't test without successful make
Running make install
Make had returned bad status, install seems impossible
Failed during this command:
NWCLARK/perl-5.8.6.tar.gz : make NO isa perl

Does this mean I need to have perl-5.8.6, and I cannot run circos on
my perl-5.8.8?

deepika lakhwani

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Dec 15, 2011, 7:45:16 AM12/15/11
to circos-data-...@googlegroups.com

i got the same problem when i installed circos...
give some solution for this.


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Martin Krzywinski

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Jan 19, 2012, 2:34:28 PM1/19/12
to circos-data-...@googlegroups.com
> Compilation failed in require at /users/ak/perl5/lib/perl5/x86_64-
> linux-ld/GD/Polyline.pm line 45.
> BEGIN failed--compilation aborted at /users/ak/perl5/lib/perl5/x86_64-
> linux-ld/GD/Polyline.pm line 45.

Your error is caused by GD::Polyline, which is a component of GD. It
is this module that needs to be reinstalled.

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