Circos

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1–30 of 1992

Circos creates data visualization with a circular layout. Currently, its primary use is to visualize genomic data that relate positions (alignments, conservation, synteny, rearrangements), but it is sufficiently flexible to be used in any application where a linear layout of scale is inadequate.

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Nuno Moura Lopes

Apr 22

Running Circos on Web Version

Hello, how can i run circos on line ?? Thank you

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Running Circos on Web Version

Hello, how can i run circos on line ?? Thank you

Apr 22

Michelle Umpierrez

Apr 17

Error message on web version of Circos

I've modified my data to be in the tab delimited table file but when I attempt to run it I get

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Error message on web version of Circos

I've modified my data to be in the tab delimited table file but when I attempt to run it I get

Apr 17

Shaun Jackman, … Beatrice Zita Passerini34

Apr 8

Installing Circos using Homebrew

Hello everyone, I am new to Circos and I am trying to install it on my Mac OS Ventura v 13.6.3. I am

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Installing Circos using Homebrew

Hello everyone, I am new to Circos and I am trying to install it on my Mac OS Ventura v 13.6.3. I am

Apr 8

Apr 7

Circos for Non-common / Common values between 2 or 3 columns

Hello Circos Community, Could you please help to show me how to draw the Circos with the criteria

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Circos for Non-common / Common values between 2 or 3 columns

Hello Circos Community, Could you please help to show me how to draw the Circos with the criteria

Apr 7

Jessica Jessie, Paulo Nuin3

Apr 3

CIRCOS Installation Issue

Hi Thank you for your guidance. That issue has been resolved. I got another issue (unable to install

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CIRCOS Installation Issue

Hi Thank you for your guidance. That issue has been resolved. I got another issue (unable to install

Apr 3

Mar 25

multi species with different genome size in one circos figure.

Hi, thank you very much for contributing such good plotting software, Circos. We have learned a lot

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multi species with different genome size in one circos figure.

Hi, thank you very much for contributing such good plotting software, Circos. We have learned a lot

Mar 25

Martin Krzywinski, … Erica4

Mar 12

Re: [circos] Show half of a circle

You can use relative spacing. See "relative spacing" at https://circos.ca/documentation/

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Re: [circos] Show half of a circle

You can use relative spacing. See "relative spacing" at https://circos.ca/documentation/

Mar 12

Feb 23

circos.conf not found error

Hi, I'm getting a circos.conf not found error when I run this command. I'm just trying to run

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circos.conf not found error

Hi, I'm getting a circos.conf not found error when I run this command. I'm just trying to run

Feb 23

Feb 23

Hi, My rows number >50, how should I do? 鲍敏丽 minlib...@163.com

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Hi, My rows number >50, how should I do? 鲍敏丽 minlib...@163.com

Feb 23

Jan 12

circos plot -bar plot to demonstrate DEG foldchange

Hi Everyone! I am trying to plot a circos plot that demonstrates each mutant (mt1, mt2,mt3, mt4,mt5,

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circos plot -bar plot to demonstrate DEG foldchange

Hi Everyone! I am trying to plot a circos plot that demonstrates each mutant (mt1, mt2,mt3, mt4,mt5,

Jan 12

Tina Segessemann

12/20/23

Option to disable subscript for circos lables?

Dear circos community Most contig names for bacterial genomes contain an underscore, eg NZ_CP066370.1

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Option to disable subscript for circos lables?

Dear circos community Most contig names for bacterial genomes contain an underscore, eg NZ_CP066370.1

12/20/23

11/19/23

I would like to draw ideograms which show contigs as a kind of circular arrows like the one below. I

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I would like to draw ideograms which show contigs as a kind of circular arrows like the one below. I

11/19/23

11/7/23

Use of uninitialized value in subroutine entry

I'm going through the circos tutorials included in http://circos.ca/distribution/circos-tutorials

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Use of uninitialized value in subroutine entry

I'm going through the circos tutorials included in http://circos.ca/distribution/circos-tutorials

11/7/23

11/4/23

Error with Circos

Hi everyone, I'm having trouble with my font compiling when I am trying to get an output of and

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Error with Circos

Hi everyone, I'm having trouble with my font compiling when I am trying to get an output of and

11/4/23

曾雋恩, Martin2

10/24/23

Error: A link must have two entries - a start and an end

There are two link file formats. The one you're using which is LINK_ID chr1 start1 end1 [options]

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Error: A link must have two entries - a start and an end

There are two link file formats. The one you're using which is LINK_ID chr1 start1 end1 [options]

10/24/23

Jui-Hung, … Alexander Yesaya3

10/24/23

How to make the synteny not a circle, but linear ?

You can try using MAXscan and TBtools On Thursday, October 5, 2023 at 8:18:44 AM UTC+8 Martin wrote:

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How to make the synteny not a circle, but linear ?

You can try using MAXscan and TBtools On Thursday, October 5, 2023 at 8:18:44 AM UTC+8 Martin wrote:

10/24/23

拾玖, Martin4

10/23/23

Dose circos can change the line position？

Dear Martin I put the " link_orientation = out" into my circos <plot> file, at first

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Dose circos can change the line position？

Dear Martin I put the " link_orientation = out" into my circos <plot> file, at first

10/23/23

LeeCK, … Martin5

10/21/23

Can't locate Circos.pm in @INC

Don't move any files or directories in the distribution. You should have circos-v0.69-9/bin/

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Can't locate Circos.pm in @INC

Don't move any files or directories in the distribution. You should have circos-v0.69-9/bin/

10/21/23

10/21/23

Configuration file error (2 - different)

Your directory tree is a little wonky. You shouldn't have everything in bin/. Instead, unzip the

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Configuration file error (2 - different)

Your directory tree is a little wonky. You shouldn't have everything in bin/. Instead, unzip the

10/21/23

Aarshi Srivastava, Martin2

9/16/23

need help in data prepration

The online version of Circos can be used to draw tabular data, of the kind that appears in Figure 5

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need help in data prepration

The online version of Circos can be used to draw tabular data, of the kind that appears in Figure 5

9/16/23

Jui-Hung, Martin4

8/28/23

Need more color

Thank you ! It's working perfectly ! Thank you for your detailed response ! Jui-Hung Martin 在

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Need more color

Thank you ! It's working perfectly ! Thank you for your detailed response ! Jui-Hung Martin 在

8/28/23

Madhuri V, Martin2

7/10/23

Couldn't understand the following error.

Can you post your conf and data files? This error relates to some under-the-hood functionality and

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Couldn't understand the following error.

Can you post your conf and data files? This error relates to some under-the-hood functionality and

7/10/23

Madhuri V, Martin2

7/10/23

I think the example you posted is very old. This is the current way of doing it http://circos.ca/

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I think the example you posted is very old. This is the current way of doing it http://circos.ca/

7/10/23

Martin, Lordoa2

6/27/23

Re: Trying to draw anything at all...

Oh worry not, the message was intended to be humoristic. I'm glad that circos exists! On Monday,

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Re: Trying to draw anything at all...

Oh worry not, the message was intended to be humoristic. I'm glad that circos exists! On Monday,

6/27/23

Junhao Wen, Martin2

6/26/23

Mac error: There was a problem with True Type font support. Circos could not render text from the font file

Looks like your libgd (system graphics library) wasn't compiled with True Type support. >

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Mac error: There was a problem with True Type font support. Circos could not render text from the font file

Looks like your libgd (system graphics library) wasn't compiled with True Type support. >

6/26/23

Himanshu Sharma, … Martin Krzywinski13

6/26/23

TTf support for Mac

The kind folks at ActiveState have created a Perl build environment for Circos. https://platform.

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TTf support for Mac

The kind folks at ActiveState have created a Perl build environment for Circos. https://platform.

6/26/23

6/26/23

Circos installation on Ubunt 18.04

Hi, I have spent days installing Circos on my Mac (Ventura) and Ubuntu (18.04), but neither worked...

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Circos installation on Ubunt 18.04

Hi, I have spent days installing Circos on my Mac (Ventura) and Ubuntu (18.04), but neither worked...

6/26/23

Caroline Nicolais

5/31/23

BLAST to CIRCOS

Hello all, I am writing to ask about going from blast to Circos as a beginner with command line

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BLAST to CIRCOS

Hello all, I am writing to ask about going from blast to Circos as a beginner with command line

5/31/23

Tom M, Martin Krzywinski2

5/31/23

Table viewer not responding

Taking a look... Martin Krzywinski science + art http://mkweb.bcgsc.ca On Wed, May 31, 2023 at 12:20

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Table viewer not responding

Taking a look... Martin Krzywinski science + art http://mkweb.bcgsc.ca On Wed, May 31, 2023 at 12:20

5/31/23

Caroline Nicolais

5/31/23

could not parse column header

Hello, I just received this error. I was wondering if anyone knew how to resolve it. ERROR PARSING

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could not parse column header

Hello, I just received this error. I was wondering if anyone knew how to resolve it. ERROR PARSING

5/31/23

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