Please post everything you like, this forum is under testing

[Meng Huang]

Please post anything you like, this forum is under testing

[duguyiw...@163.com]

在 2015年4月16日星期四 UTC+8上午6:40:30，Meng Huang写道：

> Please post anything you like, this forum is under testing

will I have already read the blink mannual

but I didn't understood the threads number set method ?

dose the parallel is the parameter or not？

[Meng Huang]

Parallel function is only available for commercial version. Thanks.

Sent from Meng Huang's iPhone

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[ga23981]

On Wednesday, April 15, 2015 at 6:40:30 PM UTC-4, Meng Huang wrote:
> Please post anything you like, this forum is under testing

Hello Meng,

I am working on bacterial genomics. The bacterium that I work on is clonally propagated. Will BLINK be a right tool to carry out GWAS on this bacteria. I have a total of 85 strains that are phenotyped.
Where can I find find the usage of BLINK and can it be used on a cluster since I work on university cluster through SSH client server?

Your response will be much appreciated.

Thank you!

[Meng Huang]

Hi,

Thanks for asking.

If your marker is SNP, I think BLINK could handle it. If you don't have SNP map information, it is Ok, but you need to create 'fake' map file that could give BLINK the name of each SNP for output file.

The usage and executable file of BLINK could be found at zzlab.net/blink

You could download linux version to your university server and give BLINK root right (chmod 777 blink_linux) or contact your IT technician to give blink root right if your are not administer.

Meng

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