BLINK Forum

Hi, Thanks for asking. If your marker is SNP, I think BLINK could handle it. If you don't have

Hi everyone, I'm running GWAS using BLINK C on a dataset with: 402 individuals ~1.8 million SNPs

I recently purchased some cameras for my home and the surrounding area and somehow they got lost and

hello, did you find out what the issue was? 在2024年12月11日星期三 UTC+8 03:37:19<Rômulo Carleial> 写道：

Also, it seems like your cutoff of pvalue for each iteration is too low. Please make sure it is 0.01/

Many thanks. Do you mean changing chromosome names to numbers? Like 1, 2 etc? On Thursday, October 24

Hi, In my Blink output, only a few SNPs which have extremely low P-values showed PVE (Phenotype

Which version of blink can be running in parallel? Thanks in advance!

Hello I wonder if Blink can be used with a presence absence kmer matrix where the position of the

IPV6 On Thursday, 16 April 2015 at 07:35:44 UTC+8 animal...@gmail.com wrote:

Hii I've tried BLINK c on your demo data, the output shows the values of taxa, chr, position, maf

I have tried and tried Several hours on the phone support with Echo and Blink sometimes at the same

Hi Rui, BLINK or FarmCPU's model is a multiple regression model that the genotype data of "

Thanks Meng, I will work with the format! meng.h...@gmail.com schrieb am Donnerstag, 11. Februar 2021

No, BLINK-R doesn't. On Fri, Jul 3, 2020 at 11:11 AM Maciej Jończyk <m.jo...@student.uw.edu.

Hi Anuj, The latest BLINK doesn't support VCF and hapmap format. Now we recommend to use PLINK

The BLINK user manual v1.01 states (P14, 7.4, opimization) that bin_size and bin_ selection can be

I dowloaded the 'blink_linux' file (https://github.com/Menggg/BLINK/blob/master/blink_linux)

ar Nath I also get such problem and solved by checking each clumn. Check if any column contains #

Hello, I have a vcf file that I want to compress and recode to HapMap format with blink to be used

Hi Morgane, Thanks for asking. We don't recommend to change LD cutoff as it may cause

Hi Meng, thanks for your quick replay! This hint is very helpful! Regards, Dominic On Monday, 8

Hi Carlos, Thanks for your report! Please change “NA” to “NaN” and try BLINKC again since BLINKC only

[agr75@compute-0-2 blink]$ ./blink_mac --gwas --file Abiskar --out abiskar -bash: ./blink_mac:

Please add "--trait 0" Sent from Meng Huang's iPhone > On Nov 13, 2017, at 6:25 AM,

Hi all, I've tried blink to convert compressed demo.data into numeric (or other) format without

No. The size limit is marker_size * sample_size < 50 million. Thanks. ---------- Meng Huang meng.

Yes, we improved BioGPU and changed it's name to BLINK. Thanks for your asking. Meng On Jul 5,

Hi Jiafa, You can't use kinship in BLINK (BioGPU) . But you can add PCA as covariates into model.

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