Announcing BioDSL - Bioinformatics Domain Specific Language

[Martin Asser Hansen]

BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows. A workflow may consist of several pipelines and each pipeline consists of a series of steps such as reading in data from a file, processing the data in some way, and writing data to a new file.

BioDSL is build on the same principles as Biopieces, where data records are passed through multiple commands each with a specific task. The idea is that a command will process the data record if this contains the relevant attributes that the command can process. E.g. if a data record contains a sequence, then the command reverse_seq will reverse that sequence.

Check it out!

Cheers,

Martin

[Marek Szubert]

Martin,

Looks very interesting. I shall have a go.

Jan Szubert

--
You received this message because you are subscribed to the Google Groups "biopieces" group.
To unsubscribe from this group and stop receiving emails from it, send an email to biopieces+...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.