biopieces

Apparently Biopieces have been packaged for Gentoo https://www.mail-archive.com/gentoo-commits@lists.

Thank you for the quick reply! It worked Op dinsdag 21 juni 2016 21:18:33 UTC+2 schreef maasha:

Yes, there has been a change so that you need to install both Inline and Inline::C, before the one

Hello Nicolas, YAML is yet-another-markup-language which is typically used for reading and writing

So bioinformatics is all about taking responsibility of your own data. Try to explicitly check the +

Martin, Looks very interesting. I shall have a go. Jan Szubert On 19 November 2015 at 10:00, Martin

www.biopieces.org now points to a new GitHub page. Enjoy. Cheers, Martin

Hello all, Google Code is closing and for a while it has been read-only. Therefore Biopieces have

You are most welcome to post you notes to this mailing list. Use a separate mail thread though.

I have not looked at plot_karyogram for years and I am afraid it is rather hard-coded so it will not

We have a new Biopieces for reading PDB files! Many thanks to Lukas Astalos for this contribution!

Obviously you should be using Biopieces daily! ;o) But seriously, this looks like an issue with the

Thanks Martin, the command worked beautifully! Seth On Fri, Dec 5, 2014 at 11:49 AM, Martin Asser

Yes, it should be fixed now, 10 times test, all pass:) cheers, Congmao On Monday, November 24, 2014

Great, 10 times test, all pass:) cheers, Congmao On Monday, November 24, 2014 10:31:08 AM UTC+1,

https://code.google.com/p/biopieces/wiki/FAQ#Errors_and_Warnings_during_installation_or_bp_test

Sorry - My mistake - got myself confused after lots of searching the web. I'll have a look at the

Hello all, For a long time I have been thinking about the next generation of Biopieces. And for a

There is no similar trouble till now :o), it seems now the test scripts are not covered for all

You are welcome to use Biopieces for anything within the scope of the License (GPL2). I have been

The $BP_TMP folder needs to be writable for those who use your Biopieces installation - mine is 777.

Check this out. I saved your test data to test.fq and did this: maasha@mel:~$ read_fastq -n 1 -e

By the way. Doing basic stats on something like digests you could do something like: read_fasta -n 1

I found the reason, rather trivial. For some reason I had to transfer this particular fastq file

Hello all, There is a new Biopiece in town for slicing alignments which is a really useful thing for

Assembly is a huge and complicated topic. First you need to set a goal for your assembly. I spend 10%

Thanks again Martin, I updated from ruby1.9.1 to ruby 2.0.0p353 (2013-11-22 revision 43784) [x86_64-

It's a tricky question both in vivo and in silico. In vivo the 3'-end being extended should

Hello all, I realized that the original logic in analyze_vals where you could choose to output the

Hello all, Here is a new Biopieces analyze_scores for the analysis of Illumina type SCORES in the