Memory problem GC overhead

[Arjen ten Have]

I am trying to use treeannotator to draw me a tree but get an error message: GC overhead limit exceeded. Googling I find out this is a problem of memory allocation. Hence, I put 8GB to my analysis. And I get the same message. The analysis is not large by any means, about 400 sequences and 280 columns, 10.000.000 MCMCs. How can I solve this?

[ryan perry]

Hi, did you ever find out how to fix this? I am having the same issue.

[Larry Buckley]

Same issue with tree annotator....Exception in thread "main" java.lang.OutOfMemoryError: GC overhead limit exceeded

Any solutions to adjust memory in treeannotator?

[Larry Buckley]

Yes, I was able to get TreeAnnotator to allocate sufficient memory to finish the consensus tree.  Right click TreeAnnotator program and choose “Show Package Contents”.   In the Contents folder, open Info.plist in a text editor and change the memory string from 1024M to a larger value depending on the available physical ram in your system.  Hope this helps.

Larry

--
You received this message because you are subscribed to a topic in the Google Groups "beast-users" group.
To unsubscribe from this topic, visit https://groups.google.com/d/topic/beast-users/X5Ri6lxmz0E/unsubscribe.
To unsubscribe from this group and all its topics, send an email to beast-users...@googlegroups.com.
To post to this group, send email to beast...@googlegroups.com.
Visit this group at http://groups.google.com/group/beast-users.
For more options, visit https://groups.google.com/d/optout.