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Alexei Drummond, … Master Cheng19

7/28/19

New version of StarBEAST2 (v0.13)

Dear Tim I want to know how to resume the analyze in Beast2,Could you sent me the relation the

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New version of StarBEAST2 (v0.13)

Dear Tim I want to know how to resume the analyze in Beast2,Could you sent me the relation the

7/28/19

Alexei Drummond2

5/1/19

6th Taming the BEAST workshop in beautiful Squamish, British Columbia (August 12-16 2019)

Applications are now closed. We have a few places left so late applications will be considered on a

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6th Taming the BEAST workshop in beautiful Squamish, British Columbia (August 12-16 2019)

Applications are now closed. We have a few places left so late applications will be considered on a

5/1/19

Alexei Drummond2

11/1/16

Workshop Announcement: Taming the BEAST in the South Pacific!

This is the final call for Taming the BEAST in the South Pacific, a 5-day summer short course on

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Workshop Announcement: Taming the BEAST in the South Pacific!

This is the final call for Taming the BEAST in the South Pacific, a 5-day summer short course on

11/1/16

Clara Malekshahi

4:21 PM

Merging node annotations from continuous phylogeography and discrete trait analysis

Hello! I have been trying to merge node annotation data from a continuous phylogeography and a

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Merging node annotations from continuous phylogeography and discrete trait analysis

Hello! I have been trying to merge node annotation data from a continuous phylogeography and a

4:21 PM

Jacob Christensen, Jordan Douglas5

4:21 PM

Speedemon coalescent rates

No, group count in BEAUti, under the yule skyline collapse model. On Wednesday, September 17, 2025 at

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Speedemon coalescent rates

No, group count in BEAUti, under the yule skyline collapse model. On Wednesday, September 17, 2025 at

4:21 PM

Gautier Richard, … Jie Zha14

Sep 22

2025 GPU for BEAST X and BEAST 2

Hi Wayne, Thanks your replies very much! I will epuip a supercomputer in my lab to deal with the

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2025 GPU for BEAST X and BEAST 2

Hi Wayne, Thanks your replies very much! I will epuip a supercomputer in my lab to deal with the

Sep 22

Sep 20

How to obtain the upper and lower limits of the 95% HPD of the two parameters of “ Prevalence ” and “ Incidence ” in Birth Death-SIR model

Hi, About the two parameters of “ Prevalence ” and “ Incidence ” estimated by the Birth Death-SIR

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How to obtain the upper and lower limits of the 95% HPD of the two parameters of “ Prevalence ” and “ Incidence ” in Birth Death-SIR model

Hi, About the two parameters of “ Prevalence ” and “ Incidence ” estimated by the Birth Death-SIR

Sep 20

Emanuele Berrilli, … beastgig9

Sep 19

SNAPP XML Error 110: Could Not Identify Newick Tree Labels – Need Help

Hi Emanuele, Thanks for the response. I am actually working with SNP data, so there are no sequences

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SNAPP XML Error 110: Could Not Identify Newick Tree Labels – Need Help

Hi Emanuele, Thanks for the response. I am actually working with SNP data, so there are no sequences

Sep 19

Kehinde Oyeniran, SIMONE MALAGÒ4

Sep 16

Stuck with SpreaD3

Hi Simone, I think the problem is that the locations must be in the same order as they appear in the

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Stuck with SpreaD3

Hi Simone, I think the problem is that the locations must be in the same order as they appear in the

Sep 16

Sep 15

Render (not) now working - kind of

Hello everyone, I'm posting only to try to give a sort of comprehensive way to render json files

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Render (not) now working - kind of

Hello everyone, I'm posting only to try to give a sort of comprehensive way to render json files

Sep 15

Sep 15

An issue about beastlabs.evolution.likelihood.AncestralStateLogger

Hi, I am trying to investigate the state distributions of each site in the genetic sequences, for the

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An issue about beastlabs.evolution.likelihood.AncestralStateLogger

Hi, I am trying to investigate the state distributions of each site in the genetic sequences, for the

Sep 15

Sep 14

java.lang.Error when running discrete phylogeographic analyses with asymmetric rate matrices

Hi BEAST2 users, I am using BEAST2.7.7 to do phylogeographical modeling of poliovirus transmission.

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java.lang.Error when running discrete phylogeographic analyses with asymmetric rate matrices

Hi BEAST2 users, I am using BEAST2.7.7 to do phylogeographical modeling of poliovirus transmission.

Sep 14

Angelica Cuevas, Emanuele Berrilli5

Sep 14

Error 110 - validate and intialize error - SNAPP

Hi Emanuele, Many thanks for finding a solution to this issue. I hadn't get back to my SNAPP

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Error 110 - validate and intialize error - SNAPP

Hi Emanuele, Many thanks for finding a solution to this issue. I hadn't get back to my SNAPP

Sep 14

Kiran Hazra, Kylie3

Sep 9

Setting different mutation rates for each taxon set

Thank you, I really appreciate your help. - Kiran On Friday, 5 September 2025 at 22:21:07 UTC-4 Kylie

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Setting different mutation rates for each taxon set

Thank you, I really appreciate your help. - Kiran On Friday, 5 September 2025 at 22:21:07 UTC-4 Kylie

Sep 9

Sep 9

Estimating relative population size or rate of change

My goal using the Bayesian skyline is to identify when changes in population size occurred, with the

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Estimating relative population size or rate of change

My goal using the Bayesian skyline is to identify when changes in population size occurred, with the

Sep 9

Shoaib Khan, Walker Orr3

Sep 4

Protein Sequence Example and Errors While Uploading Nexus File

I am having the same issues. When reconstructing ancestral sequences (or not, haven't tried

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Protein Sequence Example and Errors While Uploading Nexus File

I am having the same issues. When reconstructing ancestral sequences (or not, haven't tried

Sep 4

Arsalan Emami-Khoyi

Sep 3

Start BEAUti without GUI in the new version

Dear Remco and the community Thank you for maintaining the group. I am trying to generate multiple

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Start BEAUti without GUI in the new version

Dear Remco and the community Thank you for maintaining the group. I am trying to generate multiple

Sep 3

theo....@outlook.com2

Sep 3

OpenCL error message when running BEAST

SOLVED. I reinstalled Cuda (https://www.cherryservers.com/blog/install-cuda-ubuntu) and beast is

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OpenCL error message when running BEAST

SOLVED. I reinstalled Cuda (https://www.cherryservers.com/blog/install-cuda-ubuntu) and beast is

Sep 3

Kurt Wollenberg, Alexei Drummond2

Sep 1

BEASTX reports TMRCA for a different node than BEAST 1.10.4 and BEAST2

Hey Kurt, Strange that the HPD is significantly narrower for BEAST2 run compared to BEAST v1.10.4.

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BEASTX reports TMRCA for a different node than BEAST 1.10.4 and BEAST2

Hey Kurt, Strange that the HPD is significantly narrower for BEAST2 run compared to BEAST v1.10.4.

Sep 1

Nicolás Guerra

Aug 25

BEASTX advice on bacterial anlysis

Hi all, I ran a BEAST 2 analysis on 853 Klebsiella pneumoniae isolates for a time-scaled phylogeny

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BEASTX advice on bacterial anlysis

Hi all, I ran a BEAST 2 analysis on 853 Klebsiella pneumoniae isolates for a time-scaled phylogeny

Aug 25

Morgan Geniviva, weedy232

Aug 24

beauti bug? "Object with idref=span_1.skygrid has not been previously declared."

Hi Morgan, This is a long shot two years later, but did you ever work this out? This is happening to

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beauti bug? "Object with idref=span_1.skygrid has not been previously declared."

Hi Morgan, This is a long shot two years later, but did you ever work this out? This is happening to

Aug 24

Kalene Jasso, … Miguel Buitrago13

Aug 22

Error 110 parsing the xml input file

Hi Timothy, Thank you for your response. Indeed there was a <userDataType> line missing after

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Error 110 parsing the xml input file

Hi Timothy, Thank you for your response. Indeed there was a <userDataType> line missing after

Aug 22

Aug 22

BEAST X issue with standard data / covarion model

#NEXUS Begin data; dimensions ntax=3 nchar=11; FORMAT DATATYPE = STANDARD INTERLEAVE GAP = - MISSING

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BEAST X issue with standard data / covarion model

#NEXUS Begin data; dimensions ntax=3 nchar=11; FORMAT DATATYPE = STANDARD INTERLEAVE GAP = - MISSING

Aug 22

OlivierD, … ptes...@gmail.com4

Aug 20

Problems with BEASTvntr

Hi, I've just tested the following input using version 0.2.0, and missing data (?) is definitely

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Problems with BEASTvntr

Hi, I've just tested the following input using version 0.2.0, and missing data (?) is definitely

Aug 20

Aug 14

Using a fixed local clock, relative rate or absolute rate?

Hello BEAST community, i am sorry if this is posted elsewhere, i can't find an answer to it

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Using a fixed local clock, relative rate or absolute rate?

Hello BEAST community, i am sorry if this is posted elsewhere, i can't find an answer to it

Aug 14

Aug 14

ucldMean in multilocus analyses

Hello group, I'm running a series of analyses in Beast2 searching for a species tree based on

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ucldMean in multilocus analyses

Hello group, I'm running a series of analyses in Beast2 searching for a species tree based on

Aug 14

Aug 7

MLE- Path sampling

Hi there, I'm new to the BEAST platform and would greatly appreciate any help with the following

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MLE- Path sampling

Hi there, I'm new to the BEAST platform and would greatly appreciate any help with the following

Aug 7

Aug 3

Hi all, I am using BEAST X, continuing some work my colleague left behind. Long story short, I would

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Hi all, I am using BEAST X, continuing some work my colleague left behind. Long story short, I would

Aug 3

Katherin Hinojosa, Omar Idris2

Jul 26

Subject: Re: Help with LogCombiner Hi Katherin, Sure, happy to help! The error you're seeing — “

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Subject: Re: Help with LogCombiner Hi Katherin, Sure, happy to help! The error you're seeing — “

Jul 26

MKPUMA NICODEMUS, Gaspary Eugene3

Jul 26

How to estimate tMRCA

I have done all these, but where can go to in tracer recreate something similar to the attached

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How to estimate tMRCA

I have done all these, but where can go to in tracer recreate something similar to the attached

Jul 26

Ed Djo, … Artem B3

Jul 26

Help with Temporal Signal

Hi Ed, You shouldn't remove outliers just because they are outliers, this forces data to a model

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Help with Temporal Signal

Hi Ed, You shouldn't remove outliers just because they are outliers, this forces data to a model

Jul 26

Sunny Beckham, MUHAMMAD REHAN2

Jul 21

Seeking BEAST2 help or consultant for linguistic phylogeny project

Hi Sunny, Nice to hear about your project! You could look at the tutorial by Simon Greenhill and

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Seeking BEAST2 help or consultant for linguistic phylogeny project

Hi Sunny, Nice to hear about your project! You could look at the tutorial by Simon Greenhill and

Jul 21

Jul 19

Skygrid interpretation in HPM

Dear all, I've run a BEAST analysis including five different datasets representing distinct

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Skygrid interpretation in HPM

Dear all, I've run a BEAST analysis including five different datasets representing distinct

Jul 19

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