beast-users

Dear Tim I want to know how to resume the analyze in Beast2,Could you sent me the relation the

Applications are now closed. We have a few places left so late applications will be considered on a

This is the final call for Taming the BEAST in the South Pacific, a 5-day summer short course on

Hi Jacob, It looks like you have 6 taxa, which means that the first 6 coalescent rates correspond to

I am having the same issues. When reconstructing ancestral sequences (or not, haven't tried

On Sep 3, 2025, at 7:04 AM, Martin Gunnill <Martin....@phac-aspc.gc.ca> wrote: Dear Wayne

Hi Emanuele, Unfortunately not, I haven't been able to solve this issue. I saw in other

Hi, I was plotting my time tree from the beast tree run using the following code. #calculate the age

I already know the approximate mutation rates of the two clades that make up my study species; the

Dear Omar and Michael, thank you very much for your help. I tried removing the dashes from all the

Dear Remco and the community Thank you for maintaining the group. I am trying to generate multiple

SOLVED. I reinstalled Cuda (https://www.cherryservers.com/blog/install-cuda-ubuntu) and beast is

Hey Kurt, Strange that the HPD is significantly narrower for BEAST2 run compared to BEAST v1.10.4.

Hi all, I ran a BEAST 2 analysis on 853 Klebsiella pneumoniae isolates for a time-scaled phylogeny

Hi Morgan, This is a long shot two years later, but did you ever work this out? This is happening to

Hi Timothy, Thank you for your response. Indeed there was a <userDataType> line missing after

#NEXUS Begin data; dimensions ntax=3 nchar=11; FORMAT DATATYPE = STANDARD INTERLEAVE GAP = - MISSING

Hi, I've just tested the following input using version 0.2.0, and missing data (?) is definitely

Hello BEAST community, i am sorry if this is posted elsewhere, i can't find an answer to it

Hello group, I'm running a series of analyses in Beast2 searching for a species tree based on

Hi there, I'm new to the BEAST platform and would greatly appreciate any help with the following

Hi all, I am using BEAST X, continuing some work my colleague left behind. Long story short, I would

Subject: Re: Help with LogCombiner Hi Katherin, Sure, happy to help! The error you're seeing — “

I have done all these, but where can go to in tracer recreate something similar to the attached

Hi Ed, You shouldn't remove outliers just because they are outliers, this forces data to a model

Hi Sunny, Nice to hear about your project! You could look at the tutorial by Simon Greenhill and

Dear all, I've run a BEAST analysis including five different datasets representing distinct

Hi, I downloaded the newest BEAST version (v2.7.7), and ran a couple of examples using the GUI. When

Dear Vanja, You can follow this tutorial https://beast.community/workshop_rates_and_dates Best

✅ 1. Tune MCMC Operators - Use adaptive operators: Ensure your XML uses `adaptiveOperatorWeight` or

Hello Alfredo, Have you set a starting tree in your analysis, and if so can you make sure that the

Hello Ankita, Divergence time in years can be calculated with Beast software with a Bayesian approach

Dear BEAST user, We are pleased to announce the release of BEAST v2.7.8. The main changes are: #