Tracer 1.6 released

[Andrew Rambaut]

We have just released v1.6 of Tracer. This adds a couple of new features including the ability to reconstruct skygrid coalescent models and the ability to draw densities as kernel density estimates instead of histograms to give a smoother visualisation of posterior densities of continuous parameters. 

Grab your preferred version from here:

http://tree.bio.ed.ac.uk/software/tracer

Andrew

Andrew Rambaut 

Institute for Evolutionary Biology | Centre for Infection, Immunity & Evolution 

Ashworth Laboratories, University of Edinburgh, Edinburgh, EH3 9JT, UK

contact – a.ra...@ed.ac.uk | http://tree.bio.ed.ac.uk | tel +44 131 6508624

[Kai He]

Dear Andrew,

I wonder if this is a bug of Tracer v1.6?

When the posterior of two or more analyses are compared, value of only one analysis is shown (if the values are very different; e.g. -4000, -6000 and -8000).

Please see the pictures below. 

Thanks for your attention.

Best,

Kai He

[Andrew Rambaut]

Thanks - I will note it as a bug. It looks like it is only scaling the y-axis to the first trace. You could try clicking the 'Axis...' button below the plot and rescaling the axis manually.

Andrew

On 13 Dec 2013, at 23:25, Kai He <hk20013...@gmail.com> wrote:

Dear Andrew,

I wonder if this is a bug of Tracer v1.6?

When the posterior of two or more analyses are compared, value of only one analysis is shown (if the values are very different; e.g. -4000, -6000 and -8000).

Please see the pictures below. 

<截图3.png>

<截图4.png>

Thanks for your attention.

Best,

Kai He

At 2013-12-11 12:14:04,"Andrew Rambaut" <a.ra...@ed.ac.uk> wrote:

We have just released v1.6 of Tracer. This adds a couple of new features including the ability to reconstruct skygrid coalescent models and the ability to draw densities as kernel density estimates instead of histograms to give a smoother visualisation of posterior densities of continuous parameters. 

Grab your preferred version from here:

http://tree.bio.ed.ac.uk/software/tracer

Andrew

Andrew Rambaut 

Institute for Evolutionary Biology | Centre for Infection, Immunity & Evolution 

Ashworth Laboratories, University of Edinburgh, Edinburgh, EH3 9JT, UK

contact – a.ra...@ed.ac.uk | http://tree.bio.ed.ac.uk | tel +44 131 6508624

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[Yu Li]

Dear Andrew,

 

Attached are the trace analysis of the BEAST log file I have run.  The treeLikelihood has two peaks, does that mean two possible trees? Is there a way to show them separately?

 

Thanks for your help!

 

Y Li

contact – a.ra...@ed.ac.uk | http://tree.bio.ed.ac.uk | tel +44 131 6508624

[Shiya Song]

scaling y-axis manually doesn't work either...Thanks!